| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351902
Identifier: 115351902
GI number: 115351902
Start: 2034665
End: 2035207
Strand: Direct
Name: 115351902
Synonym: Bamb_1851
Alternate gene names: NA
Gene position: 2034665-2035207 (Clockwise)
Preceding gene: 115351900
Following gene: 115351918
Centisome position: 57.21
GC content: 63.9
Gene sequence:
>543_bases TTGCATGTCGCCGATCAACGCGTCGTAGCTGCGCTCGCACTGCCGGCCGGCAATACCGCGCTCGTCAGCGATCTTTGCCA ACTCTCCCGCAGCTTCGTCAGTCCGGCCGAGCACGTCGGCGAGCAGATCGAGGGCGTCGCCGGTTGCCGGGCTTCCGGCC GAAGCGCCGGCACGTCGGACGTCGGCGACGAGTGCGGCGACTTGCTTGCGCAGGCCGTCAGCAGCGCCATCGGCAGCAGC AGCTTCGCGGCGTGCCTGATCACGTTCTTTCGCAGCATCGGTTGCGATCTCCTGTTGAGCCGCCAGTTGGCGGCGAATTT CACGACGCTCTGTCGTCAGATCATTTATCTGCTTCGCCTGATCCGCGACTTTCGCGGATTGGTCGGCATCACGATGTCCC TTGGAATACCCGCACGCCGCACCTGCAATAACGCCGGCAACAACGAGCAGCCAGATGCGCGGGTCGATCCATGTCATGCG ACCACCTCCCCGCCGGCCGCGCGGTACGCAGCCAGCAAATGTTCGATCTTGTTTTCGTGCTGA
Upstream 100 bases:
>100_bases TGGAAAGGCGACCGGGGAGCGTGTTGCTGCACGCAGCTCGGTCGCCCTGTTTCTCTCGAGACCGCTCGGTCTCGGTGCCG CGTTATCGCGGCTGATTGAA
Downstream 100 bases:
>100_bases CCGTAGCCGGCCCCCGGCAGACTGGCCCATACGTTCGAGACTTTTGCGACCGCCTCGCGGAACCGGCCTGCGTCGATCAA CGCCAACGCACCGTGCTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 180; Mature: 180
Protein sequence:
>180_residues MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA TTSPPAARYAASKCSILFSC
Sequences:
>Translated_180_residues MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA TTSPPAARYAASKCSILFSC >Mature_180_residues MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA TTSPPAARYAASKCSILFSC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18850; Mature: 18850
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 5.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSD CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCH VGDECGDLLAQAVSSAIGSSSFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH IRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHATTSPPAARYAASKCSILFSC HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECC >Mature Secondary Structure MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSD CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCH VGDECGDLLAQAVSSAIGSSSFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRL HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH IRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHATTSPPAARYAASKCSILFSC HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA