Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351902

Identifier: 115351902

GI number: 115351902

Start: 2034665

End: 2035207

Strand: Direct

Name: 115351902

Synonym: Bamb_1851

Alternate gene names: NA

Gene position: 2034665-2035207 (Clockwise)

Preceding gene: 115351900

Following gene: 115351918

Centisome position: 57.21

GC content: 63.9

Gene sequence:

>543_bases
TTGCATGTCGCCGATCAACGCGTCGTAGCTGCGCTCGCACTGCCGGCCGGCAATACCGCGCTCGTCAGCGATCTTTGCCA
ACTCTCCCGCAGCTTCGTCAGTCCGGCCGAGCACGTCGGCGAGCAGATCGAGGGCGTCGCCGGTTGCCGGGCTTCCGGCC
GAAGCGCCGGCACGTCGGACGTCGGCGACGAGTGCGGCGACTTGCTTGCGCAGGCCGTCAGCAGCGCCATCGGCAGCAGC
AGCTTCGCGGCGTGCCTGATCACGTTCTTTCGCAGCATCGGTTGCGATCTCCTGTTGAGCCGCCAGTTGGCGGCGAATTT
CACGACGCTCTGTCGTCAGATCATTTATCTGCTTCGCCTGATCCGCGACTTTCGCGGATTGGTCGGCATCACGATGTCCC
TTGGAATACCCGCACGCCGCACCTGCAATAACGCCGGCAACAACGAGCAGCCAGATGCGCGGGTCGATCCATGTCATGCG
ACCACCTCCCCGCCGGCCGCGCGGTACGCAGCCAGCAAATGTTCGATCTTGTTTTCGTGCTGA

Upstream 100 bases:

>100_bases
TGGAAAGGCGACCGGGGAGCGTGTTGCTGCACGCAGCTCGGTCGCCCTGTTTCTCTCGAGACCGCTCGGTCTCGGTGCCG
CGTTATCGCGGCTGATTGAA

Downstream 100 bases:

>100_bases
CCGTAGCCGGCCCCCGGCAGACTGGCCCATACGTTCGAGACTTTTGCGACCGCCTCGCGGAACCGGCCTGCGTCGATCAA
CGCCAACGCACCGTGCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS
SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA
TTSPPAARYAASKCSILFSC

Sequences:

>Translated_180_residues
MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS
SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA
TTSPPAARYAASKCSILFSC
>Mature_180_residues
MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSDVGDECGDLLAQAVSSAIGSS
SFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRLIRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHA
TTSPPAARYAASKCSILFSC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18850; Mature: 18850

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSD
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCH
VGDECGDLLAQAVSSAIGSSSFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHATTSPPAARYAASKCSILFSC
HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECC
>Mature Secondary Structure
MHVADQRVVAALALPAGNTALVSDLCQLSRSFVSPAEHVGEQIEGVAGCRASGRSAGTSD
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCH
VGDECGDLLAQAVSSAIGSSSFAACLITFFRSIGCDLLLSRQLAANFTTLCRQIIYLLRL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
IRDFRGLVGITMSLGIPARRTCNNAGNNEQPDARVDPCHATTSPPAARYAASKCSILFSC
HHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA