Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351895

Identifier: 115351895

GI number: 115351895

Start: 2030369

End: 2030860

Strand: Direct

Name: 115351895

Synonym: Bamb_1844

Alternate gene names: NA

Gene position: 2030369-2030860 (Clockwise)

Preceding gene: 115351893

Following gene: 115351896

Centisome position: 57.09

GC content: 60.16

Gene sequence:

>492_bases
GTGTTTTTATACAGTATTTCAGCCGTGATCAAACCACAGTGGGCCTACATCTGGGAGTACGGATTCCAGGGCGACAATGC
GCGCCTGAGGACGCCGATCGAGCTCACGAAACGTGAATTTGAGTCGTGGGTCGACAAGGACCCGCGGTCGGCGTTCCTCG
GCACATGCGCGCCGGTCGAGTCGACCAGAATTGACCGCAACCGCGTCCCGCTCACGGACCCGCGATTCAAGTTGCGGCCG
GTGGTGCCGGAATTTGATGCGCCCACCGAGGACGAACTTCGCGCGCTGTGGCGCGAGTACACCGACCTTCAAGTCCGATG
GTTGATCCTGGAGATCCGCGCCCTTCGGAAATCGCTCGAGCGCGTCGAGGAGTGGTACGCGTACACCGACAAGAACGTTG
CGAACAAAGGTGACCTCGCCGGAGCGCAAGGGCAGTTGCATCGGTTGATGCATCTACTGCGCGAGGAAATGAGGCGCGCG
GGAATGAGGTAA

Upstream 100 bases:

>100_bases
TCGCTGAGACCGGGATCCTCGCCGGGCGCTACGTAGTTCGTGCACATCGCCGCCCCCTGTTTTTCGTTCTTGACCGAACC
ATCATACCCCGCGCTACACT

Downstream 100 bases:

>100_bases
GGCTAAGTCAATTGCTGGCTAGTAGTCTGCTCGCTGCACCATCTGCTGCGCGCCGAGAAGGGTCGGGCCGGGATGCTCAA
ACCCCAATGCTTCCCTACTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MFLYSISAVIKPQWAYIWEYGFQGDNARLRTPIELTKREFESWVDKDPRSAFLGTCAPVESTRIDRNRVPLTDPRFKLRP
VVPEFDAPTEDELRALWREYTDLQVRWLILEIRALRKSLERVEEWYAYTDKNVANKGDLAGAQGQLHRLMHLLREEMRRA
GMR

Sequences:

>Translated_163_residues
MFLYSISAVIKPQWAYIWEYGFQGDNARLRTPIELTKREFESWVDKDPRSAFLGTCAPVESTRIDRNRVPLTDPRFKLRP
VVPEFDAPTEDELRALWREYTDLQVRWLILEIRALRKSLERVEEWYAYTDKNVANKGDLAGAQGQLHRLMHLLREEMRRA
GMR
>Mature_163_residues
MFLYSISAVIKPQWAYIWEYGFQGDNARLRTPIELTKREFESWVDKDPRSAFLGTCAPVESTRIDRNRVPLTDPRFKLRP
VVPEFDAPTEDELRALWREYTDLQVRWLILEIRALRKSLERVEEWYAYTDKNVANKGDLAGAQGQLHRLMHLLREEMRRA
GMR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19355; Mature: 19355

Theoretical pI: Translated: 8.99; Mature: 8.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLYSISAVIKPQWAYIWEYGFQGDNARLRTPIELTKREFESWVDKDPRSAFLGTCAPVE
CCEEEEHHHHCCCHHEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
STRIDRNRVPLTDPRFKLRPVVPEFDAPTEDELRALWREYTDLQVRWLILEIRALRKSLE
CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RVEEWYAYTDKNVANKGDLAGAQGQLHRLMHLLREEMRRAGMR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFLYSISAVIKPQWAYIWEYGFQGDNARLRTPIELTKREFESWVDKDPRSAFLGTCAPVE
CCEEEEHHHHCCCHHEEEEECCCCCCCEECCHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
STRIDRNRVPLTDPRFKLRPVVPEFDAPTEDELRALWREYTDLQVRWLILEIRALRKSLE
CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
RVEEWYAYTDKNVANKGDLAGAQGQLHRLMHLLREEMRRAGMR
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA