| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351893
Identifier: 115351893
GI number: 115351893
Start: 2028310
End: 2029467
Strand: Direct
Name: 115351893
Synonym: Bamb_1842
Alternate gene names: NA
Gene position: 2028310-2029467 (Clockwise)
Preceding gene: 115351892
Following gene: 115351895
Centisome position: 57.03
GC content: 51.21
Gene sequence:
>1158_bases ATGGGGCACAAAGGAAAACTACTGCCGCTACTTGGAGAAATCTTGAAAGCGGAAGCAGTGAACGCCTCAAAAATCGCAGA TCCTTTTTGCGGATCTGGCGCAGTTTCTTGGTATATGGCTCAGGAAACCGATAAGGGCGTCTTATCGGGTGACCTCCAGT CGTTTGCTGTAACTCGCGCCGCTGCGGTCGTTGAGCGCACACGAGCAATTGATTCGAACCGCGTTACCAAACGTTGGTTC GAATCCGCTCGATCCGTCGTCGATAGTATCGTCAGTCAATTTCCCAATGCGGCCAGATCGATTCACCCTGAAATTTCCGT ACCCGAAATTCAGAATATAGTAATCCGGTCGAGGACATTCTGCGATGAAGTTTTACCACCCCTACTCTCGCGAATGAGCG GCGACTTTCCGATGACTCACGCGTATGGCGGGCACTATTTCTCTCCGCTGCAAGCCATCGAGATTGACGCACTTCGGCAG ACACTTCCGAAATCCGCAGAGACAAGAAAAGCCTGTCTCGCGGCACTTGTGGAAGCCGCGAGCCGCTGTGCGGCTGCTCC AGGTCACACAGCCCAGCCGTTTCAACCGACAAAAACAGCCGCCAAATTTATCGCTGAGGCATGGAATCGCAACGTTTGGC TACTAGTTTCCCAAGCACTAGAGACAATTGCGTCAACCCACGCTACAGTGAAGGGAGGCACATGTCTCGGCGACTACCAT AAATGCATCAGTCAATTGGAACCAGGGGATCTAGTCTTTGCTGATCCGCCGTATTCTGACGTGCATTACAGCCGCTTCTA CCATGTATTGGAAACGCTCACTCGAGGGAAGCAAGTTTCCGTGACGGGCGTCGGGCGCTACCCTCCCATTGCGCAACGCC CTTCTTCTAATTTTAGCCAGAAAGGCCAAGCCTTCGCAGCCGCGCAACGGCTTATTGACGTATGCATGAGTAAAGAGGTC AATTTAGTATTAACATTCCCATCGAACAAAGCGAGCAATGGATTAAGCACGCGCGACTTTGTTGCGATGGGTCGAGGGAA ATTTCGATCAATCGAGACCGAGCAAGTTAACTCTACGTTTAGCACACTCGGAGGAAAATCTTCAAATCGCGGTGGAAGAA TAGAATGTTCCGAAAGCATTGTTTGCTTTCGCGTCTGA
Upstream 100 bases:
>100_bases CCCTGCCAAACTCGCTGTGGGATGGTGAAAACTCATCGCGGTTAGCGAAACTTTCACGCCCCGATGCGTGCATTGCCTGG AGTCTTGTTGCATGAAGTAC
Downstream 100 bases:
>100_bases ATCCGCGCAATAGTTCTATAGATCGATGACGAGCGTGACGCTTATCCGACACATTCACGCACGCCGCTGTTGTCAACCTG AATTCCGCAAAGCGCCCGTT
Product: adenine-specific DNA methylase-like protein
Products: NA
Alternate protein names: Adenine-Specific DNA Methylase-Like Protein; DNA Methyltransferase; Restriction- System Methyltransferase
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MGHKGKLLPLLGEILKAEAVNASKIADPFCGSGAVSWYMAQETDKGVLSGDLQSFAVTRAAAVVERTRAIDSNRVTKRWF ESARSVVDSIVSQFPNAARSIHPEISVPEIQNIVIRSRTFCDEVLPPLLSRMSGDFPMTHAYGGHYFSPLQAIEIDALRQ TLPKSAETRKACLAALVEAASRCAAAPGHTAQPFQPTKTAAKFIAEAWNRNVWLLVSQALETIASTHATVKGGTCLGDYH KCISQLEPGDLVFADPPYSDVHYSRFYHVLETLTRGKQVSVTGVGRYPPIAQRPSSNFSQKGQAFAAAQRLIDVCMSKEV NLVLTFPSNKASNGLSTRDFVAMGRGKFRSIETEQVNSTFSTLGGKSSNRGGRIECSESIVCFRV
Sequences:
>Translated_385_residues MGHKGKLLPLLGEILKAEAVNASKIADPFCGSGAVSWYMAQETDKGVLSGDLQSFAVTRAAAVVERTRAIDSNRVTKRWF ESARSVVDSIVSQFPNAARSIHPEISVPEIQNIVIRSRTFCDEVLPPLLSRMSGDFPMTHAYGGHYFSPLQAIEIDALRQ TLPKSAETRKACLAALVEAASRCAAAPGHTAQPFQPTKTAAKFIAEAWNRNVWLLVSQALETIASTHATVKGGTCLGDYH KCISQLEPGDLVFADPPYSDVHYSRFYHVLETLTRGKQVSVTGVGRYPPIAQRPSSNFSQKGQAFAAAQRLIDVCMSKEV NLVLTFPSNKASNGLSTRDFVAMGRGKFRSIETEQVNSTFSTLGGKSSNRGGRIECSESIVCFRV >Mature_384_residues GHKGKLLPLLGEILKAEAVNASKIADPFCGSGAVSWYMAQETDKGVLSGDLQSFAVTRAAAVVERTRAIDSNRVTKRWFE SARSVVDSIVSQFPNAARSIHPEISVPEIQNIVIRSRTFCDEVLPPLLSRMSGDFPMTHAYGGHYFSPLQAIEIDALRQT LPKSAETRKACLAALVEAASRCAAAPGHTAQPFQPTKTAAKFIAEAWNRNVWLLVSQALETIASTHATVKGGTCLGDYHK CISQLEPGDLVFADPPYSDVHYSRFYHVLETLTRGKQVSVTGVGRYPPIAQRPSSNFSQKGQAFAAAQRLIDVCMSKEVN LVLTFPSNKASNGLSTRDFVAMGRGKFRSIETEQVNSTFSTLGGKSSNRGGRIECSESIVCFRV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41830; Mature: 41699
Theoretical pI: Translated: 9.10; Mature: 9.10
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHKGKLLPLLGEILKAEAVNASKIADPFCGSGAVSWYMAQETDKGVLSGDLQSFAVTRA CCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH AAVVERTRAIDSNRVTKRWFESARSVVDSIVSQFPNAARSIHPEISVPEIQNIVIRSRTF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHH CDEVLPPLLSRMSGDFPMTHAYGGHYFSPLQAIEIDALRQTLPKSAETRKACLAALVEAA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SRCAAAPGHTAQPFQPTKTAAKFIAEAWNRNVWLLVSQALETIASTHATVKGGTCLGDYH HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHH KCISQLEPGDLVFADPPYSDVHYSRFYHVLETLTRGKQVSVTGVGRYPPIAQRPSSNFSQ HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH KGQAFAAAQRLIDVCMSKEVNLVLTFPSNKASNGLSTRDFVAMGRGKFRSIETEQVNSTF HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH STLGGKSSNRGGRIECSESIVCFRV HHHCCCCCCCCCEEEECCCEEEEEC >Mature Secondary Structure GHKGKLLPLLGEILKAEAVNASKIADPFCGSGAVSWYMAQETDKGVLSGDLQSFAVTRA CCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH AAVVERTRAIDSNRVTKRWFESARSVVDSIVSQFPNAARSIHPEISVPEIQNIVIRSRTF HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHH CDEVLPPLLSRMSGDFPMTHAYGGHYFSPLQAIEIDALRQTLPKSAETRKACLAALVEAA HHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH SRCAAAPGHTAQPFQPTKTAAKFIAEAWNRNVWLLVSQALETIASTHATVKGGTCLGDYH HHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHH KCISQLEPGDLVFADPPYSDVHYSRFYHVLETLTRGKQVSVTGVGRYPPIAQRPSSNFSQ HHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHH KGQAFAAAQRLIDVCMSKEVNLVLTFPSNKASNGLSTRDFVAMGRGKFRSIETEQVNSTF HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHH STLGGKSSNRGGRIECSESIVCFRV HHHCCCCCCCCCEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA