Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351891

Identifier: 115351891

GI number: 115351891

Start: 2025495

End: 2027015

Strand: Direct

Name: 115351891

Synonym: Bamb_1840

Alternate gene names: NA

Gene position: 2025495-2027015 (Clockwise)

Preceding gene: 115351890

Following gene: 115351892

Centisome position: 56.95

GC content: 52.6

Gene sequence:

>1521_bases
ATGACAAAAACAACTCGCATACCGCTTGTCCGGGTCAATCAGTGGATGCAAAGCTGGAACAATGCCGAATGGAGTGAGCA
CCTTCCGGAGCCTTCACCCTACTTTTTCATTGCCTCGATCAGCCTCGCCACGTTGCGCCGCTTGGCTGGCGTTAGCACAC
GCAATGTGCATGAGCGGCGAGATAGGAAGGTGGGCGCCGGCTACCAACGTGCTCACCAACCGGCACGGTCGCGCAACATT
GCGCGATATCTCCAGTTCGGGTATCCGCTATCGGGGCAGTCTGGTCTCGATGTTGAAACGCACCGAAACCTTATTCATCC
GGGCTGGCTCCCCACGTCCATTCTCGTAAACGTGGTGGGTGCCGACGAGTCGCGTCGGCGCGGCGGGAAGGACCGTGTCG
TCGATGACAATTGTCGCGTGTCTGTCAGTGAAGGCGAAGACGGTGCGTTTCTCAAAATACCTCAGGAGGCTCTTGCACAA
GGGTTCAAAATTCCCGCATCAAGCCTCGAACCACTTGAGATCATTGACGGTCAGCATCGACTTTATGCAATCGACGAGAT
TAATGGCGAACCCGATATCGAAAATTACGAAGTCCCAGTCGTAATTTTTAACAATTTGAGCCCATCTTGGCAGGCCTATC
TTTTTTGGGTTATTAACGTAGAACCCAAAAAGATTAACCCGAGCCTAGCATATGACTTGTATCCGGAACTGCGAAATCAA
AGTTGGCTCCAAGGTGGGGAAGGCATTCGCGTTTATCAAGAACATCGCGCCCAAGAGCTTACGGAAGTTCTGTGGCGCCA
TGATTTGAGTCCATGGAAAGGCCGAATCGAGCTACATGGCAATCGAGTCGACGGGCATGTATCAAACGCGGCATTTATTC
GATCGCTAATGGTGAGTTTCGTTCGAAGCTGGGGCAACGAAGATAAAATTGGCGGATTGTTTGGCTCCCTTCGCTCCCAA
GGAGCCGATCGAGTATTGCCCTGGAAGCGTTCACAGCAGGCAGCATTTTTGATCCGATGCTGGCAACACCTCCATGAGGC
GACTTGCACGTCCAACGCAAAGTGGGTTCGCGAATTGACCAAGCATACATCACCGGAAGACGCATTCTCTGGCCCTAACA
CCCTTCTTGGCACGGACCAAGGGGTGCGCGCCGTTCTTGTTATATTCAATGCGCTAAATCAAGTAGCTTACGCTGAACTC
GACTTGGAATCTTGGGAATCTGAACGAGTATCAGACGAGCCAGACGAAGATGAAGTAACGGAAGCACTCACCGAGTTTTC
TCAGTACAAGAGACCCAATACGTTTCTGAGCGCGATATCGCGAGCGCTTGTCGATGGGGTCGACTGGCGGACATCAAGCG
CTCCGGGCTTGGACCAAAATCAACGTACCGAGCAGAGCGTTTATCGTGGCAGCAGCGGCTATGTACTGTTGCAGCAACGA
TGCTTTGATGCGTTGAAAAACTCCCCCGACGAACTCGTGGCGAGTTCCGCAAATACTGCTGCGGGGCTTATGAAGCGATG
A

Upstream 100 bases:

>100_bases
CGTCTTCGCAAGCGCTATCGATTGGGGCCGCTCGTAGTACCATTCTCCGAAACCGCACCCGGCAACGGGCGCAAAGTCAA
CGAGACCATCAATTTTCACA

Downstream 100 bases:

>100_bases
GCAAAACAAAAAACAAGGGGAAAGTCGGGGCCAATAAAAGCGTAGGTGGGAATAAGGCCTTGGGGAGCGGTGGAGGCCCC
GTCAATAAAGGGCAGGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MTKTTRIPLVRVNQWMQSWNNAEWSEHLPEPSPYFFIASISLATLRRLAGVSTRNVHERRDRKVGAGYQRAHQPARSRNI
ARYLQFGYPLSGQSGLDVETHRNLIHPGWLPTSILVNVVGADESRRRGGKDRVVDDNCRVSVSEGEDGAFLKIPQEALAQ
GFKIPASSLEPLEIIDGQHRLYAIDEINGEPDIENYEVPVVIFNNLSPSWQAYLFWVINVEPKKINPSLAYDLYPELRNQ
SWLQGGEGIRVYQEHRAQELTEVLWRHDLSPWKGRIELHGNRVDGHVSNAAFIRSLMVSFVRSWGNEDKIGGLFGSLRSQ
GADRVLPWKRSQQAAFLIRCWQHLHEATCTSNAKWVRELTKHTSPEDAFSGPNTLLGTDQGVRAVLVIFNALNQVAYAEL
DLESWESERVSDEPDEDEVTEALTEFSQYKRPNTFLSAISRALVDGVDWRTSSAPGLDQNQRTEQSVYRGSSGYVLLQQR
CFDALKNSPDELVASSANTAAGLMKR

Sequences:

>Translated_506_residues
MTKTTRIPLVRVNQWMQSWNNAEWSEHLPEPSPYFFIASISLATLRRLAGVSTRNVHERRDRKVGAGYQRAHQPARSRNI
ARYLQFGYPLSGQSGLDVETHRNLIHPGWLPTSILVNVVGADESRRRGGKDRVVDDNCRVSVSEGEDGAFLKIPQEALAQ
GFKIPASSLEPLEIIDGQHRLYAIDEINGEPDIENYEVPVVIFNNLSPSWQAYLFWVINVEPKKINPSLAYDLYPELRNQ
SWLQGGEGIRVYQEHRAQELTEVLWRHDLSPWKGRIELHGNRVDGHVSNAAFIRSLMVSFVRSWGNEDKIGGLFGSLRSQ
GADRVLPWKRSQQAAFLIRCWQHLHEATCTSNAKWVRELTKHTSPEDAFSGPNTLLGTDQGVRAVLVIFNALNQVAYAEL
DLESWESERVSDEPDEDEVTEALTEFSQYKRPNTFLSAISRALVDGVDWRTSSAPGLDQNQRTEQSVYRGSSGYVLLQQR
CFDALKNSPDELVASSANTAAGLMKR
>Mature_505_residues
TKTTRIPLVRVNQWMQSWNNAEWSEHLPEPSPYFFIASISLATLRRLAGVSTRNVHERRDRKVGAGYQRAHQPARSRNIA
RYLQFGYPLSGQSGLDVETHRNLIHPGWLPTSILVNVVGADESRRRGGKDRVVDDNCRVSVSEGEDGAFLKIPQEALAQG
FKIPASSLEPLEIIDGQHRLYAIDEINGEPDIENYEVPVVIFNNLSPSWQAYLFWVINVEPKKINPSLAYDLYPELRNQS
WLQGGEGIRVYQEHRAQELTEVLWRHDLSPWKGRIELHGNRVDGHVSNAAFIRSLMVSFVRSWGNEDKIGGLFGSLRSQG
ADRVLPWKRSQQAAFLIRCWQHLHEATCTSNAKWVRELTKHTSPEDAFSGPNTLLGTDQGVRAVLVIFNALNQVAYAELD
LESWESERVSDEPDEDEVTEALTEFSQYKRPNTFLSAISRALVDGVDWRTSSAPGLDQNQRTEQSVYRGSSGYVLLQQRC
FDALKNSPDELVASSANTAAGLMKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57190; Mature: 57058

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTTRIPLVRVNQWMQSWNNAEWSEHLPEPSPYFFIASISLATLRRLAGVSTRNVHERR
CCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
DRKVGAGYQRAHQPARSRNIARYLQFGYPLSGQSGLDVETHRNLIHPGWLPTSILVNVVG
HCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHC
ADESRRRGGKDRVVDDNCRVSVSEGEDGAFLKIPQEALAQGFKIPASSLEPLEIIDGQHR
CCHHHHCCCCCCEECCCCEEEECCCCCCCEEECCHHHHHCCCCCCCCCCCCHHHCCCCCE
LYAIDEINGEPDIENYEVPVVIFNNLSPSWQAYLFWVINVEPKKINPSLAYDLYPELRNQ
EEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCHHHHHCHHHCCC
SWLQGGEGIRVYQEHRAQELTEVLWRHDLSPWKGRIELHGNRVDGHVSNAAFIRSLMVSF
CHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VRSWGNEDKIGGLFGSLRSQGADRVLPWKRSQQAAFLIRCWQHLHEATCTSNAKWVRELT
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KHTSPEDAFSGPNTLLGTDQGVRAVLVIFNALNQVAYAELDLESWESERVSDEPDEDEVT
HCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHH
EALTEFSQYKRPNTFLSAISRALVDGVDWRTSSAPGLDQNQRTEQSVYRGSSGYVLLQQR
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHH
CFDALKNSPDELVASSANTAAGLMKR
HHHHHHCCHHHHHHCCCCHHHHHHCC
>Mature Secondary Structure 
TKTTRIPLVRVNQWMQSWNNAEWSEHLPEPSPYFFIASISLATLRRLAGVSTRNVHERR
CCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
DRKVGAGYQRAHQPARSRNIARYLQFGYPLSGQSGLDVETHRNLIHPGWLPTSILVNVVG
HCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHC
ADESRRRGGKDRVVDDNCRVSVSEGEDGAFLKIPQEALAQGFKIPASSLEPLEIIDGQHR
CCHHHHCCCCCCEECCCCEEEECCCCCCCEEECCHHHHHCCCCCCCCCCCCHHHCCCCCE
LYAIDEINGEPDIENYEVPVVIFNNLSPSWQAYLFWVINVEPKKINPSLAYDLYPELRNQ
EEEEECCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCHHHHHCHHHCCC
SWLQGGEGIRVYQEHRAQELTEVLWRHDLSPWKGRIELHGNRVDGHVSNAAFIRSLMVSF
CHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
VRSWGNEDKIGGLFGSLRSQGADRVLPWKRSQQAAFLIRCWQHLHEATCTSNAKWVRELT
HHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
KHTSPEDAFSGPNTLLGTDQGVRAVLVIFNALNQVAYAELDLESWESERVSDEPDEDEVT
HCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCHHHHH
EALTEFSQYKRPNTFLSAISRALVDGVDWRTSSAPGLDQNQRTEQSVYRGSSGYVLLQQR
HHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHH
CFDALKNSPDELVASSANTAAGLMKR
HHHHHHCCHHHHHHCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA