| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351892
Identifier: 115351892
GI number: 115351892
Start: 2027012
End: 2028304
Strand: Direct
Name: 115351892
Synonym: Bamb_1841
Alternate gene names: NA
Gene position: 2027012-2028304 (Clockwise)
Preceding gene: 115351891
Following gene: 115351893
Centisome position: 56.99
GC content: 50.43
Gene sequence:
>1293_bases ATGAGCAAAACAAAAAACAAGGGGAAAGTCGGGGCCAATAAAAGCGTAGGTGGGAATAAGGCCTTGGGGAGCGGTGGAGG CCCCGTCAATAAAGGGCAGGAATGGAGTGAATCCATTTGCGCTGCGGCCGATGGCAAAGGCACTTTGCTTGGATTACAGC AACTTGGCCCAGCCAGCAATCCTCAGAATTTGCTCATCACGGCCGCTTTAAGCAACAACCCACAGTGTTTGCTTGCCGCG GAACAGATCATTCATCTTGTAGATGGATGGAGATATGCAGCCGCTGCGACATCAGCGTTCTTGGCTCATTCGAACGCGGC CGCCACGCATTTTGCGTATTACGCCGAACTTCGGGCGGCAATGTCGCTCTTCGCATGGAGTGGAATTCGAGCGAAATGGA ACGGATATTTTTATCTCGATAAGGATGGCAACAAAAAGATAACTACCAAAAACCCACCAACCCATACAGGGATTTGGGAT ATTTGGAATCAATGGACAAAGAGACCAGACGTAGAATTGCTTCTGGCGAATAGCATCCATTTACATCCAGTCGCGACGTT GAAGAATGTAGTCAAGGCCATCAACTTCACCATTCCTCAACAAGCGCTGAGTCAATGGGGATCGGATCTTGTAAAAGTGT CCGAAGACCATACGGCAAGAAATACCGCGAGCTATGAGGCTATCTGGGCTAGCGCTGAACTGACACGAATGGAAACAAAA GAAGCAGAGTTGGTTCGCGATCTTTGGAAATTGTTCCTTCCGGACGGCGGATCGCTTGGCTTTGACGCAGCTCTGTGTAA CCACTTTATCTCAAAGCGAGCACCGGAGGACGATGAGGCAGGAAGAAAGGCCTTTGTCGAAAAAGTAGCAAAGCACATCG CAGATAATTGCGGCGCCCCTACGGAAGAAATTTCACGGCGGATTACCGTAGATTCTTACGTTTCGAAGCCGTTTGTATTG GCATCCGAAGAAAAGACAAACACCGACAATGTACTCTGTCGTGCGTTTCTACTTCTCCGGATCGCTATGCTCGCTCTCAA AAGATCACTTAGCGTGCCGGGCGTCTCACCAGTTGCACGCAAGTGGCTCGAAAGCTGGCTCGAGCACGCCGGCTTGTGGT CGCGCTCTTTTGACATCGATCCGATAGATATCGAGGTCGATTATCGCGACGCAGTGACAGATTTTTCATTCCCACCTCCC CTGCCAAACTCGCTGTGGGATGGTGAAAACTCATCGCGGTTAGCGAAACTTTCACGCCCCGATGCGTGCATTGCCTGGAG TCTTGTTGCATGA
Upstream 100 bases:
>100_bases GCTATGTACTGTTGCAGCAACGATGCTTTGATGCGTTGAAAAACTCCCCCGACGAACTCGTGGCGAGTTCCGCAAATACT GCTGCGGGGCTTATGAAGCG
Downstream 100 bases:
>100_bases AGTACATGGGGCACAAAGGAAAACTACTGCCGCTACTTGGAGAAATCTTGAAAGCGGAAGCAGTGAACGCCTCAAAAATC GCAGATCCTTTTTGCGGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MSKTKNKGKVGANKSVGGNKALGSGGGPVNKGQEWSESICAAADGKGTLLGLQQLGPASNPQNLLITAALSNNPQCLLAA EQIIHLVDGWRYAAAATSAFLAHSNAAATHFAYYAELRAAMSLFAWSGIRAKWNGYFYLDKDGNKKITTKNPPTHTGIWD IWNQWTKRPDVELLLANSIHLHPVATLKNVVKAINFTIPQQALSQWGSDLVKVSEDHTARNTASYEAIWASAELTRMETK EAELVRDLWKLFLPDGGSLGFDAALCNHFISKRAPEDDEAGRKAFVEKVAKHIADNCGAPTEEISRRITVDSYVSKPFVL ASEEKTNTDNVLCRAFLLLRIAMLALKRSLSVPGVSPVARKWLESWLEHAGLWSRSFDIDPIDIEVDYRDAVTDFSFPPP LPNSLWDGENSSRLAKLSRPDACIAWSLVA
Sequences:
>Translated_430_residues MSKTKNKGKVGANKSVGGNKALGSGGGPVNKGQEWSESICAAADGKGTLLGLQQLGPASNPQNLLITAALSNNPQCLLAA EQIIHLVDGWRYAAAATSAFLAHSNAAATHFAYYAELRAAMSLFAWSGIRAKWNGYFYLDKDGNKKITTKNPPTHTGIWD IWNQWTKRPDVELLLANSIHLHPVATLKNVVKAINFTIPQQALSQWGSDLVKVSEDHTARNTASYEAIWASAELTRMETK EAELVRDLWKLFLPDGGSLGFDAALCNHFISKRAPEDDEAGRKAFVEKVAKHIADNCGAPTEEISRRITVDSYVSKPFVL ASEEKTNTDNVLCRAFLLLRIAMLALKRSLSVPGVSPVARKWLESWLEHAGLWSRSFDIDPIDIEVDYRDAVTDFSFPPP LPNSLWDGENSSRLAKLSRPDACIAWSLVA >Mature_429_residues SKTKNKGKVGANKSVGGNKALGSGGGPVNKGQEWSESICAAADGKGTLLGLQQLGPASNPQNLLITAALSNNPQCLLAAE QIIHLVDGWRYAAAATSAFLAHSNAAATHFAYYAELRAAMSLFAWSGIRAKWNGYFYLDKDGNKKITTKNPPTHTGIWDI WNQWTKRPDVELLLANSIHLHPVATLKNVVKAINFTIPQQALSQWGSDLVKVSEDHTARNTASYEAIWASAELTRMETKE AELVRDLWKLFLPDGGSLGFDAALCNHFISKRAPEDDEAGRKAFVEKVAKHIADNCGAPTEEISRRITVDSYVSKPFVLA SEEKTNTDNVLCRAFLLLRIAMLALKRSLSVPGVSPVARKWLESWLEHAGLWSRSFDIDPIDIEVDYRDAVTDFSFPPPL PNSLWDGENSSRLAKLSRPDACIAWSLVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47095; Mature: 46964
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKTKNKGKVGANKSVGGNKALGSGGGPVNKGQEWSESICAAADGKGTLLGLQQLGPASN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHCCCCCC PQNLLITAALSNNPQCLLAAEQIIHLVDGWRYAAAATSAFLAHSNAAATHFAYYAELRAA CCCEEEEEEECCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MSLFAWSGIRAKWNGYFYLDKDGNKKITTKNPPTHTGIWDIWNQWTKRPDVELLLANSIH HHHHHHCCCCEEECEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCC LHPVATLKNVVKAINFTIPQQALSQWGSDLVKVSEDHTARNTASYEAIWASAELTRMETK CCHHHHHHHHHHHHCCCCCHHHHHHHCHHHEEECCCCCCCCCCCHHHEECCHHHHHHHHH EAELVRDLWKLFLPDGGSLGFDAALCNHFISKRAPEDDEAGRKAFVEKVAKHIADNCGAP HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC TEEISRRITVDSYVSKPFVLASEEKTNTDNVLCRAFLLLRIAMLALKRSLSVPGVSPVAR HHHHHHCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH KWLESWLEHAGLWSRSFDIDPIDIEVDYRDAVTDFSFPPPLPNSLWDGENSSRLAKLSRP HHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC DACIAWSLVA CCEEEEEECC >Mature Secondary Structure SKTKNKGKVGANKSVGGNKALGSGGGPVNKGQEWSESICAAADGKGTLLGLQQLGPASN CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEHHHCCCCCC PQNLLITAALSNNPQCLLAAEQIIHLVDGWRYAAAATSAFLAHSNAAATHFAYYAELRAA CCCEEEEEEECCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH MSLFAWSGIRAKWNGYFYLDKDGNKKITTKNPPTHTGIWDIWNQWTKRPDVELLLANSIH HHHHHHCCCCEEECEEEEEECCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCC LHPVATLKNVVKAINFTIPQQALSQWGSDLVKVSEDHTARNTASYEAIWASAELTRMETK CCHHHHHHHHHHHHCCCCCHHHHHHHCHHHEEECCCCCCCCCCCHHHEECCHHHHHHHHH EAELVRDLWKLFLPDGGSLGFDAALCNHFISKRAPEDDEAGRKAFVEKVAKHIADNCGAP HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCC TEEISRRITVDSYVSKPFVLASEEKTNTDNVLCRAFLLLRIAMLALKRSLSVPGVSPVAR HHHHHHCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH KWLESWLEHAGLWSRSFDIDPIDIEVDYRDAVTDFSFPPPLPNSLWDGENSSRLAKLSRP HHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCC DACIAWSLVA CCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA