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The map label for this gene is intB [H]

Identifier: 115351890

GI number: 115351890

Start: 2024037

End: 2025281

Strand: Direct

Name: intB [H]

Synonym: Bamb_1839

Alternate gene names: 115351890

Gene position: 2024037-2025281 (Clockwise)

Preceding gene: 115351884

Following gene: 115351891

Centisome position: 56.91

GC content: 58.23

Gene sequence:

>1245_bases
GTGCCACTTACCGACATCAAGATCCGACAAGCGAAGGCAGGCAACAAGCCTACCAAACTTACCGACGGCAATGGACTGTA
TCTGTTGGTGAAGCCGTCCGGCTCCAAGCTTTGGCGATACAAGTACCGAATTGCCGGGAAGGAAAATGTCTTCGCGATCG
GCGAGTATCCCACCACCAGCCTTCAAGCCGCGCGCGTAGCACGCGACGATGCGCGTGAGCTTGTCAAAAAGGGGCTACAC
CCATCCCATGCACGACAGGAGGTCCTGTCTGCGCGCATTAACGAAGGCAAAGCCACTTTTCGTGCCGTCAGCGACGAGTG
GCTGGAGAAGAAGCGCAAGACGTGGACGGAGCGGCACTTCGGCGAGATTCTGCGCATGCTCGAAGCAGACGCATACCCGT
ACATCGGGAACCGCCCGATGCGCTCTATTACCGCCCACGATGTGCTTGCGCTGATGCGCCGGGTCGAAAAGCGCGGCTCC
CCTTCCGTAGCGATCAAACTACGTCAGTACGTGTCCAACGTGTTCCAGTACGCGGTGATCACGCTTCGGGCCGATACCGA
TCCAGCCTCGGTGTTGCGCGGAGCAGTTCTCAAGCCGCCGACCGAGCATGCTCGGCCGCTAAGCCGTGAAGAACTGAAGG
CGCTGTTTCGGCAATTGCCCCTGTACAAGAGCAAGAGAACCACGATTGCGATCCGCCTGCTGATGATGCTGTTTCCGAGA
ACGGTTGAGCTTTGTCGAGCGCGCTGGGAGGAAATCGATCTGGCCGCCGCTGAGTGGCGAGTCCCGCCGGAGAAGATCAA
ATCGCGACGGCTGCACATCGTTCCGCTTCCCACGCAGGCGATCAGTCTGCTGCGCGAGTTGCAGGAGATCCACGGCAATC
GCGGATATATCCTGCCGATCCTTCATAGCAATCGAAAACGGCCCCACATGAGTCGAGCAACAATCAATCGGGCGCTCGAC
TCCATGATGCCGAACAACCCCGAACCGATAACGGGCCATGACTTCCGAGCAACCGCGTCGACGAACCTCCACGAGATGGG
CTGGAAGGATGAAGTCGTTGAAATGCAGCTATCGCACAAGGACAAAGACAGAACCCGCTCAACGTACAATCACGCAAAGT
ATCTTCCAGAGCGACGAGAAATGATGCAGTCATGGGCCGATTGGCTCAGCGACGTCGAGAATGACGCGCTCACCGACGCG
TCGGCGGCAAGCACCGTCACGCCTGACCAACGACGTGAAGAATGA

Upstream 100 bases:

>100_bases
TTCACTTACGTTCGCCGGAAATCGTGTCCAGTCGAGAAAAAGGGGGGTACAAAAGGGGGTATCATTTCGACCATCCAGAG
ACGATACCCCCTTTTTCACC

Downstream 100 bases:

>100_bases
TCTCCGCCTTTGGACTCGGCCTTCTACCCCGCCCGCCCGGATAGTCCGCTACTGGCGACCGAGGGCCAGCATGGGGCGAC
ACGTCATCGAGCGGCCGCAC

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MPLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQAARVARDDARELVKKGLH
PSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGS
PSVAIKLRQYVSNVFQYAVITLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTTIAIRLLMMLFPR
TVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPILHSNRKRPHMSRATINRALD
SMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALTDA
SAASTVTPDQRREE

Sequences:

>Translated_414_residues
MPLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQAARVARDDARELVKKGLH
PSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGS
PSVAIKLRQYVSNVFQYAVITLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTTIAIRLLMMLFPR
TVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPILHSNRKRPHMSRATINRALD
SMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALTDA
SAASTVTPDQRREE
>Mature_413_residues
PLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTSLQAARVARDDARELVKKGLHP
SHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHFGEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSP
SVAIKLRQYVSNVFQYAVITLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTTIAIRLLMMLFPRT
VELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPILHSNRKRPHMSRATINRALDS
MMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHKDKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALTDAS
AASTVTPDQRREE

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=395, Percent_Identity=36.2025316455696, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1788690, Length=390, Percent_Identity=32.8205128205128, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=32.6732673267327, Blast_Score=207, Evalue=8e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47631; Mature: 47500

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTS
CCCCCCEEHHHCCCCCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCH
LQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVI
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEE
TLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTTIAIRLLMMLFPR
EEECCCCHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
TVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPI
HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
LHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHK
EECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHCCCHHHHHHHHHHCC
DKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALTDASAASTVTPDQRREE
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
PLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTS
CCCCCEEHHHCCCCCCCEEECCCCEEEEEECCCCCEEEEEEEECCCCCEEEECCCCCCH
LQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHF
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
GEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVI
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEE
TLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTTIAIRLLMMLFPR
EEECCCCHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
TVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILPI
HHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEE
LHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSHK
EECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHCCCHHHHHHHHHHCC
DKDRTRSTYNHAKYLPERREMMQSWADWLSDVENDALTDASAASTVTPDQRREE
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]