| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yeiH [C]
Identifier: 115351709
GI number: 115351709
Start: 1829925
End: 1831001
Strand: Direct
Name: yeiH [C]
Synonym: Bamb_1657
Alternate gene names: 115351709
Gene position: 1829925-1831001 (Clockwise)
Preceding gene: 115351700
Following gene: 115351710
Centisome position: 51.45
GC content: 69.92
Gene sequence:
>1077_bases ATGTCCACTGCTCCTGCCCCCCATCTCAGCCACGCCGCGCCGTCGATGCGCGGCCAGTTGAACGGCGTGCTGTTCGTCGC GCTGTTCGCCGCCGCCGTCACGAGCCTGTCGGAACTGCCGGCGATCGCCGGGCTCGGCCTGTCGCCACTGATCGTCGGGA TCGTCGCCGGCGCGCTGTACGGCAACGCACTGCGCGACGGCATGCCCGCGAGCTGGGCGGCCGGCGTCAACTTTTCCGCG CGCAAGCTGCTGCGCATCGCGGTCGCGTTCTTCGGCTTGCGCGTGAGCCTGCAGGAAATCGCGCAGGTCGGCCTACCCGG CCTGACGGTATCGGTGCTGGTCGTCGTCAGCACGCTCGTGATCGGCACCTGGGTCGGCATGAAGGTGATGAAGCTCGATC GCGACGCGGCGCTGCTGACCGCCGCCGGCAGCGCGATCTGCGGCGCGGCCGCCGTGCTCGCGTTCGAGTCGACGCTGCAG TCGAAGCCGCACCAGAGCGCGATGGCCGTGGGCAGCGTGGTGCTGTTCGGCACGCTGTCGATGTTCCTCTACCCGCTCGC GTATCACGCCGGCCTGCTCGGCCTCGACCCGACCGGCCTCGGCCTGTTCTTCGGCGGCACGATCCACGAGGTTGCGCAGG TGGTCGGCGCGGCGAGCGACATCAGCCCGCAGGTCACGCACGTCGCGACCATCGTGAAGATGACCCGCGTGATGCTGCTG GTGCCGGTGCTGCTCACGCTCGGCTGGTGGCTCGCCCGCTCCGCCCGCTCGGCCAGCGCGAGCGCCGACGGCGCGCAAGG CAAACGCAAGGTGGCGGTGCCGTGGTTCGCGCTCGGTTTCCTCGGCTTCGTGATCGTCAATTCGCTGAACGTGCTGCCCG CCGATGTCACGCATACGCTGAACCTGCTCGACACCTTCGCGCTGACGATGGCGATGACCGCGCTCGGCATCGAGACCCGC GTGTCGCAGATCCGCGAAGCCGGCCCCCGCGCCCTGACCACCGGCCTGATCCTGTACGTCTGGCTGATCGCCGGCGGCTA CGGGATCACCTGGGCCGTGCAGCGCTGCCTTGGCTGA
Upstream 100 bases:
>100_bases CGGCTTTCCGGATAGTTTACGTCACAAATCACAATTTTTCATATCGATATATCCAAATTAGGATTAAGCCATCGCAACCT GCTTCGCCACGGTGCCCTTC
Downstream 100 bases:
>100_bases GCCGCGCATCCACGCCGCGACACGCGCCGCGCCCGACGGGAAGGTCCCGCGGGCGCGGCGCAGTGCTATGCTTCGCGTCG TTTTCCTTCGTCCCCTTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MSTAPAPHLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSA RKLLRIAVAFFGLRVSLQEIAQVGLPGLTVSVLVVVSTLVIGTWVGMKVMKLDRDAALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLGLDPTGLGLFFGGTIHEVAQVVGAASDISPQVTHVATIVKMTRVMLL VPVLLTLGWWLARSARSASASADGAQGKRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNLLDTFALTMAMTALGIETR VSQIREAGPRALTTGLILYVWLIAGGYGITWAVQRCLG
Sequences:
>Translated_358_residues MSTAPAPHLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSA RKLLRIAVAFFGLRVSLQEIAQVGLPGLTVSVLVVVSTLVIGTWVGMKVMKLDRDAALLTAAGSAICGAAAVLAFESTLQ SKPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLGLDPTGLGLFFGGTIHEVAQVVGAASDISPQVTHVATIVKMTRVMLL VPVLLTLGWWLARSARSASASADGAQGKRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNLLDTFALTMAMTALGIETR VSQIREAGPRALTTGLILYVWLIAGGYGITWAVQRCLG >Mature_357_residues STAPAPHLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALYGNALRDGMPASWAAGVNFSAR KLLRIAVAFFGLRVSLQEIAQVGLPGLTVSVLVVVSTLVIGTWVGMKVMKLDRDAALLTAAGSAICGAAAVLAFESTLQS KPHQSAMAVGSVVLFGTLSMFLYPLAYHAGLLGLDPTGLGLFFGGTIHEVAQVVGAASDISPQVTHVATIVKMTRVMLLV PVLLTLGWWLARSARSASASADGAQGKRKVAVPWFALGFLGFVIVNSLNVLPADVTHTLNLLDTFALTMAMTALGIETRV SQIREAGPRALTTGLILYVWLIAGGYGITWAVQRCLG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family [H]
Homologues:
Organism=Escherichia coli, GI1788482, Length=320, Percent_Identity=40.3125, Blast_Score=228, Evalue=4e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004630 - InterPro: IPR018383 [H]
Pfam domain/function: PF03601 Cons_hypoth698 [H]
EC number: NA
Molecular weight: Translated: 37064; Mature: 36933
Theoretical pI: Translated: 10.17; Mature: 10.17
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAPAPHLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALY CCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLTVSVLVVVSTLV HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGTWVGMKVMKLDRDAALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFLYPLAYHAGLLGLDPTGLGLFFGGTIHEVAQVVGAASDISPQVTHVATIVKMTRVMLL HHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VPVLLTLGWWLARSARSASASADGAQGKRKVAVPWFALGFLGFVIVNSLNVLPADVTHTL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCHHHHHH NLLDTFALTMAMTALGIETRVSQIREAGPRALTTGLILYVWLIAGGYGITWAVQRCLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure STAPAPHLSHAAPSMRGQLNGVLFVALFAAAVTSLSELPAIAGLGLSPLIVGIVAGALY CCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH GNALRDGMPASWAAGVNFSARKLLRIAVAFFGLRVSLQEIAQVGLPGLTVSVLVVVSTLV HHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGTWVGMKVMKLDRDAALLTAAGSAICGAAAVLAFESTLQSKPHQSAMAVGSVVLFGTLS HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH MFLYPLAYHAGLLGLDPTGLGLFFGGTIHEVAQVVGAASDISPQVTHVATIVKMTRVMLL HHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH VPVLLTLGWWLARSARSASASADGAQGKRKVAVPWFALGFLGFVIVNSLNVLPADVTHTL HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCCCCHHHHHH NLLDTFALTMAMTALGIETRVSQIREAGPRALTTGLILYVWLIAGGYGITWAVQRCLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12534463 [H]