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The map label for this gene is ynfJ [C]

Identifier: 115351710

GI number: 115351710

Start: 1831069

End: 1832850

Strand: Direct

Name: ynfJ [C]

Synonym: Bamb_1658

Alternate gene names: 115351710

Gene position: 1831069-1832850 (Clockwise)

Preceding gene: 115351709

Following gene: 115351712

Centisome position: 51.48

GC content: 68.41

Gene sequence:

>1782_bases
ATGCTTCGCGTCGTTTTCCTTCGTCCCCTTCATCAATCTCTTTCAGCCGTGCTCTCGTTCCTGCTGAAGCTGCGCACTCG
CGCCCAGACGCTGTTCCGCCTGTCGGACGCCCATACGATGCTGATCTGGTCGGCCGTCGTCGGCGTCGGCGGCGCCTTCG
CCACCATGACGTTCCGCGAAGGCATCGACCTGATGCAGCACCTGATCTCCGGGCACAGCGGCAGCTTCGTGCAGATGGCG
AGAAGCCTGCCGTGGTACGTGCGCTTCTGGATGCCGGCCGCGGGCGGCTTCCTGGCCGGCTGCGTGCTGCTGCTCGCGAC
GCGCGGCGACAGCAAGGCCGCCAAGACCGACTACATGGAAGCCGTCGCGCTCGGCGACGGCGTCGTGCCGGTGCGCCAGA
GCCTGTGGCGCAGCGTGTCGTCGCTGCTGACGATCGGCAGCGGCGGCTCGATCGGCCGCGAAGGCCCGATGGTGCAGCTC
GCGGCGCTGGCCGCGTCGCTGGTCGGCCGCTTCGTGCACTTCGACCCGCCGCGCCTGCGCCTGCTCGTCGCATGCGGCGC
GGCGGCCGGTATCACGTCCGCGTACAACGCGCCGATCGCCGGCGCGTTCTTCATCTCCGAAATCGTGCTCGGCACGATCG
CGATGGAGAGCTTCGGGCCGATGGTCGTCGCGTCCGTGGTCGCGAACATCGTGATGCGGGAATTCGCCGGCTACCGGCCG
CCGTACGAGATGCCGGTGTTCCCGGCCGTGACGGGCCCCGAGGTGCTGCTGTTCGTCGTGCTCGGCGCGCTGTGCGGCGT
GCTCGCGCCGCAGTTCCTGCATCTGCTCGATGCGTCGAAGAACCAGTTCAAGCGGCTGCCCGTGCCGCTGCCGGTGCGGC
TCGCGCTCGGCGGCCTCGTGGTCGGCGTGATCTCGGTGTGGATTCCGGACGTGTGGGGCAACGGCTACAGCGTCGTGAAC
CAGATCCTGCATTCGCCGTGGACCTGGCAGGCGCTCGTCGCGGTGCTGGTGTTCAAGGTGATCGCGACCGCCGCGACGGC
CGGCTCGGGCGCGGTCGGCGGCGTGTTCACGCCGACGCTGTTCGTCGGCGCCGTGTTCGGCTCGCTGTTCGGCCTCGCGA
TGAACGCGCTGTGGCCCGGCCACACGTCCGCGTACTTCGCGTATGCGATGGTCGGGATGGGCGCGTTCATGGCCGGCGCC
ACGCAGGCGCCGCTCATGGCGATCCTGATGATCTTCGAGATGACGCTGAGCTACCAGGTCGTGCTGCCGCTCCTGGTGTC
GTGCGTGTTCGCGTATTTCGTCGCGCGCGCGACCGGCACGACGTCGATGTACGAGATCACGCTGCGCCACCACCAGGACG
CGCAGGAACGGCTGCGGCTGCGCACCACGCAGATGCGCGAACTGATCCAGCCCGCGCAGACGGTCGTGCCGCTCGCCGCG
AGCGTCGCCGACATGACGCGCGTATTTCTCGAATATCCGGTGAAGTATCTGTACGTGACCGACGACGCCGGGCGCTTTCG
CGGCGCGGTCGCATTGAAGGACATCACGTCCGACCTGCTCGACAAGCGCGACACGACCGACAAGACGGCCGCGCACTACG
CGCACACGCCGTTTCCGCTGCTCACGCCCGACATGCCGCTCGCGACCGCGCTCGAACGCTTCATGGCGTTCCAGGGCGAA
CGACTGCCGGTGATCGAAAGCGAAGCCGAGCCGACGCTCGCGGGGGTCGTCTACAAGACGTCGCTGCTCGATGCGTACCG
GCGGATGACCGGCGAGCGTTGA

Upstream 100 bases:

>100_bases
ATCACCTGGGCCGTGCAGCGCTGCCTTGGCTGAGCCGCGCATCCACGCCGCGACACGCGCCGCGCCCGACGGGAAGGTCC
CGCGGGCGCGGCGCAGTGCT

Downstream 100 bases:

>100_bases
CGCATTAGGCGAGCCGCGCCGCCGCATTCCTGGTCGGCCGTGCCGCCCGCCGCCTGAGCGTTCAGCCCGGCTCGCGACCC
AGCACGACCCGTGCGAAGAA

Product: putative voltage-gated ClC-type chloride channel ClcB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MLRVVFLRPLHQSLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAVVGVGGAFATMTFREGIDLMQHLISGHSGSFVQMA
RSLPWYVRFWMPAAGGFLAGCVLLLATRGDSKAAKTDYMEAVALGDGVVPVRQSLWRSVSSLLTIGSGGSIGREGPMVQL
AALAASLVGRFVHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFISEIVLGTIAMESFGPMVVASVVANIVMREFAGYRP
PYEMPVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQFKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVN
QILHSPWTWQALVAVLVFKVIATAATAGSGAVGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAMVGMGAFMAGA
TQAPLMAILMIFEMTLSYQVVLPLLVSCVFAYFVARATGTTSMYEITLRHHQDAQERLRLRTTQMRELIQPAQTVVPLAA
SVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFQGE
RLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER

Sequences:

>Translated_593_residues
MLRVVFLRPLHQSLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAVVGVGGAFATMTFREGIDLMQHLISGHSGSFVQMA
RSLPWYVRFWMPAAGGFLAGCVLLLATRGDSKAAKTDYMEAVALGDGVVPVRQSLWRSVSSLLTIGSGGSIGREGPMVQL
AALAASLVGRFVHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFISEIVLGTIAMESFGPMVVASVVANIVMREFAGYRP
PYEMPVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQFKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVN
QILHSPWTWQALVAVLVFKVIATAATAGSGAVGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAMVGMGAFMAGA
TQAPLMAILMIFEMTLSYQVVLPLLVSCVFAYFVARATGTTSMYEITLRHHQDAQERLRLRTTQMRELIQPAQTVVPLAA
SVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFQGE
RLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER
>Mature_593_residues
MLRVVFLRPLHQSLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAVVGVGGAFATMTFREGIDLMQHLISGHSGSFVQMA
RSLPWYVRFWMPAAGGFLAGCVLLLATRGDSKAAKTDYMEAVALGDGVVPVRQSLWRSVSSLLTIGSGGSIGREGPMVQL
AALAASLVGRFVHFDPPRLRLLVACGAAAGITSAYNAPIAGAFFISEIVLGTIAMESFGPMVVASVVANIVMREFAGYRP
PYEMPVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQFKRLPVPLPVRLALGGLVVGVISVWIPDVWGNGYSVVN
QILHSPWTWQALVAVLVFKVIATAATAGSGAVGGVFTPTLFVGAVFGSLFGLAMNALWPGHTSAYFAYAMVGMGAFMAGA
TQAPLMAILMIFEMTLSYQVVLPLLVSCVFAYFVARATGTTSMYEITLRHHQDAQERLRLRTTQMRELIQPAQTVVPLAA
SVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPLLTPDMPLATALERFMAFQGE
RLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER

Specific function: Unknown

COG id: COG0038

COG function: function code P; Chloride channel protein EriC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily [H]

Homologues:

Organism=Homo sapiens, GI55770838, Length=495, Percent_Identity=23.2323232323232, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI55770840, Length=495, Percent_Identity=23.2323232323232, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI153252026, Length=501, Percent_Identity=23.75249500998, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI87081943, Length=421, Percent_Identity=38.479809976247, Blast_Score=206, Evalue=5e-54,
Organism=Escherichia coli, GI1786350, Length=331, Percent_Identity=28.7009063444109, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17532615, Length=355, Percent_Identity=24.2253521126761, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014743
- InterPro:   IPR001807 [H]

Pfam domain/function: PF00654 Voltage_CLC [H]

EC number: NA

Molecular weight: Translated: 64047; Mature: 64047

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVVFLRPLHQSLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAVVGVGGAFATMTFRE
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
GIDLMQHLISGHSGSFVQMARSLPWYVRFWMPAAGGFLAGCVLLLATRGDSKAAKTDYME
HHHHHHHHHCCCCCHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
AVALGDGVVPVRQSLWRSVSSLLTIGSGGSIGREGPMVQLAALAASLVGRFVHFDPPRLR
HHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
LLVACGAAAGITSAYNAPIAGAFFISEIVLGTIAMESFGPMVVASVVANIVMREFAGYRP
HHEECCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PYEMPVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQFKRLPVPLPVRLALGGLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHH
VGVISVWIPDVWGNGYSVVNQILHSPWTWQALVAVLVFKVIATAATAGSGAVGGVFTPTL
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
FVGAVFGSLFGLAMNALWPGHTSAYFAYAMVGMGAFMAGATQAPLMAILMIFEMTLSYQV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLPLLVSCVFAYFVARATGTTSMYEITLRHHQDAQERLRLRTTQMRELIQPAQTVVPLAA
HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPL
HHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCC
LTPDMPLATALERFMAFQGERLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLRVVFLRPLHQSLSAVLSFLLKLRTRAQTLFRLSDAHTMLIWSAVVGVGGAFATMTFRE
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHH
GIDLMQHLISGHSGSFVQMARSLPWYVRFWMPAAGGFLAGCVLLLATRGDSKAAKTDYME
HHHHHHHHHCCCCCHHHHHHHCCCCEEEEHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
AVALGDGVVPVRQSLWRSVSSLLTIGSGGSIGREGPMVQLAALAASLVGRFVHFDPPRLR
HHHHCCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH
LLVACGAAAGITSAYNAPIAGAFFISEIVLGTIAMESFGPMVVASVVANIVMREFAGYRP
HHEECCCHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC
PYEMPVFPAVTGPEVLLFVVLGALCGVLAPQFLHLLDASKNQFKRLPVPLPVRLALGGLV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHH
VGVISVWIPDVWGNGYSVVNQILHSPWTWQALVAVLVFKVIATAATAGSGAVGGVFTPTL
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
FVGAVFGSLFGLAMNALWPGHTSAYFAYAMVGMGAFMAGATQAPLMAILMIFEMTLSYQV
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLPLLVSCVFAYFVARATGTTSMYEITLRHHQDAQERLRLRTTQMRELIQPAQTVVPLAA
HHHHHHHHHHHHHHHHCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVADMTRVFLEYPVKYLYVTDDAGRFRGAVALKDITSDLLDKRDTTDKTAAHYAHTPFPL
HHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCC
LTPDMPLATALERFMAFQGERLPVIESEAEPTLAGVVYKTSLLDAYRRMTGER
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]