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The map label for this gene is ywbI [H]

Identifier: 115351656

GI number: 115351656

Start: 1778486

End: 1779379

Strand: Direct

Name: ywbI [H]

Synonym: Bamb_1603

Alternate gene names: 115351656

Gene position: 1778486-1779379 (Clockwise)

Preceding gene: 115351655

Following gene: 115351659

Centisome position: 50.01

GC content: 69.13

Gene sequence:

>894_bases
ATGGTGAACCCGCTTCATTTCGATCTGCAGTCGCTGCGCGTGTTCGCGCTCGTCGCCGAGCACGGCAGCCTGACCAAGGC
GGCCGAACACGGCCAGCTCACGCTGTCCGCGGTCAGCAAGCGGATCGCCGAGCTCGAGAGCGTGACCGGCAGCGCGCTGT
TCGTGCGGCATGCGCGCGGCGTCGAGCTGACGCCGGCGGGCCGCGCGCTGCTCGAGCATGCGGCGAAGGTCATCGAGCAG
GTCAACCGGATGGCGCACGAGATGAGCGACTACGTCGCCGGCGTGCGCGGCCACATTCACGTGTGGACTAACACGTCGGC
CATCGTCCAGTTCCTGCCGGCCGATCTCGCCGCGTTCCTCACCGACAACCCCGGTATCAAGGTCAGCCTCGAGGAGCGGC
TGAGCCACGAGATCGTCGACGCGCTCGGCTCCGGCAAGGCCGATCTCGGCGTGTTCGCGGACAACGTGCCCGCGCCCGGC
ATCGAACGGCGGCTGTACCGGCGCGACGAGCTCGTGCTGCTCGTGCCGCGCGGGCATCGCTTCGCCGCGCACGACAGCAT
CCGCTTCGCGGATACGCTCGATGAAGACTACGTCGGCCTGAGCGACGGCAGCTCGCTGCTGGCGCGAATGACCGACGCCG
CGTTTGCGGCCGAGCGCTCGCTGAAGCTGCGCATCCAGGTATCGAATTTCGACGGCGTGAGCCGGATGATCGAGGCCGGC
CTCGGGATCGGCGTGCTGCCGCGCGACGCGGTGACCGGCGAGCGCGCGGCGCGGCTCGGGGTCGTGAAGCTCGACGATGC
GTGGGCGACGCGCACGCTGTGGGTCGGCGTGAAGGCCGGCACCGTGCTGACCACCGACATCGCGAAGCTGTTCGATTTCA
TGTCGGCACGCTGA

Upstream 100 bases:

>100_bases
GTCACACCGGTTCGCGCCGCGCGCGGCCGGGCGTATGATCGGCATCGGGCCGGTCCGGTGCCGTTCGTCCGCGCCGCATG
GCTTTTGCAAGGACCTCCTC

Downstream 100 bases:

>100_bases
ACGAGCGGAACGCGCCGCACGCGAAGCCCGGGGCGCGCATGCGCACGCCCCGGCGCAGCGCGCCGCGTCATACCGGGTTG
ATGTCGTCCTGGCTGCGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MVNPLHFDLQSLRVFALVAEHGSLTKAAEHGQLTLSAVSKRIAELESVTGSALFVRHARGVELTPAGRALLEHAAKVIEQ
VNRMAHEMSDYVAGVRGHIHVWTNTSAIVQFLPADLAAFLTDNPGIKVSLEERLSHEIVDALGSGKADLGVFADNVPAPG
IERRLYRRDELVLLVPRGHRFAAHDSIRFADTLDEDYVGLSDGSSLLARMTDAAFAAERSLKLRIQVSNFDGVSRMIEAG
LGIGVLPRDAVTGERAARLGVVKLDDAWATRTLWVGVKAGTVLTTDIAKLFDFMSAR

Sequences:

>Translated_297_residues
MVNPLHFDLQSLRVFALVAEHGSLTKAAEHGQLTLSAVSKRIAELESVTGSALFVRHARGVELTPAGRALLEHAAKVIEQ
VNRMAHEMSDYVAGVRGHIHVWTNTSAIVQFLPADLAAFLTDNPGIKVSLEERLSHEIVDALGSGKADLGVFADNVPAPG
IERRLYRRDELVLLVPRGHRFAAHDSIRFADTLDEDYVGLSDGSSLLARMTDAAFAAERSLKLRIQVSNFDGVSRMIEAG
LGIGVLPRDAVTGERAARLGVVKLDDAWATRTLWVGVKAGTVLTTDIAKLFDFMSAR
>Mature_297_residues
MVNPLHFDLQSLRVFALVAEHGSLTKAAEHGQLTLSAVSKRIAELESVTGSALFVRHARGVELTPAGRALLEHAAKVIEQ
VNRMAHEMSDYVAGVRGHIHVWTNTSAIVQFLPADLAAFLTDNPGIKVSLEERLSHEIVDALGSGKADLGVFADNVPAPG
IERRLYRRDELVLLVPRGHRFAAHDSIRFADTLDEDYVGLSDGSSLLARMTDAAFAAERSLKLRIQVSNFDGVSRMIEAG
LGIGVLPRDAVTGERAARLGVVKLDDAWATRTLWVGVKAGTVLTTDIAKLFDFMSAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=25.7731958762887, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790399, Length=295, Percent_Identity=26.4406779661017, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI157672245, Length=193, Percent_Identity=29.0155440414508, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=243, Percent_Identity=27.9835390946502, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=25.3424657534247, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787806, Length=280, Percent_Identity=24.6428571428571, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=23.2, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367136, Length=244, Percent_Identity=25, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=26.530612244898, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=24.8995983935743, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786713, Length=137, Percent_Identity=34.3065693430657, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=277, Percent_Identity=25.6317689530686, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=259, Percent_Identity=26.2548262548263, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=27.9835390946502, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790262, Length=256, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081904, Length=173, Percent_Identity=27.7456647398844, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=154, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787530, Length=296, Percent_Identity=21.2837837837838, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788296, Length=297, Percent_Identity=23.5690235690236, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32191; Mature: 32191

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNPLHFDLQSLRVFALVAEHGSLTKAAEHGQLTLSAVSKRIAELESVTGSALFVRHARG
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHHHHCCCCEEEEEECCC
VELTPAGRALLEHAAKVIEQVNRMAHEMSDYVAGVRGHIHVWTNTSAIVQFLPADLAAFL
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
TDNPGIKVSLEERLSHEIVDALGSGKADLGVFADNVPAPGIERRLYRRDELVLLVPRGHR
CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHCCCCEEEEEECCCE
FAAHDSIRFADTLDEDYVGLSDGSSLLARMTDAAFAAERSLKLRIQVSNFDGVSRMIEAG
EECCCCEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCC
LGIGVLPRDAVTGERAARLGVVKLDDAWATRTLWVGVKAGTVLTTDIAKLFDFMSAR
CCCCCCCCCCCCCCHHHHCCEEEECCCCCEEEEEEEEECCEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVNPLHFDLQSLRVFALVAEHGSLTKAAEHGQLTLSAVSKRIAELESVTGSALFVRHARG
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEHHHHHHHHHHHHHCCCCEEEEEECCC
VELTPAGRALLEHAAKVIEQVNRMAHEMSDYVAGVRGHIHVWTNTSAIVQFLPADLAAFL
CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH
TDNPGIKVSLEERLSHEIVDALGSGKADLGVFADNVPAPGIERRLYRRDELVLLVPRGHR
CCCCCEEEEHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHCCCCEEEEEECCCE
FAAHDSIRFADTLDEDYVGLSDGSSLLARMTDAAFAAERSLKLRIQVSNFDGVSRMIEAG
EECCCCEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCC
LGIGVLPRDAVTGERAARLGVVKLDDAWATRTLWVGVKAGTVLTTDIAKLFDFMSAR
CCCCCCCCCCCCCCHHHHCCEEEECCCCCEEEEEEEEECCEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]