| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351659
Identifier: 115351659
GI number: 115351659
Start: 1782766
End: 1783866
Strand: Direct
Name: 115351659
Synonym: Bamb_1606
Alternate gene names: NA
Gene position: 1782766-1783866 (Clockwise)
Preceding gene: 115351656
Following gene: 115351660
Centisome position: 50.13
GC content: 71.21
Gene sequence:
>1101_bases ATGATTCCCTCGACCGACAACCGGACGCTGTTGCGCACCCTCGGCATCCGCACCCCGATCATCCAGGCGCCGATGGCCGG CGTCAGCACACCCGCGCTGGCGGCAGCCGTGTCGAATGCGGGCGGCCTCGGCTCGCTCGGCGTCGGCGCGACGAACGCCG ACGGCGCGCGCAAGATGATCCGCGACACGCGCGCGCTCACCGACCGGCCGTTCAACATCAACCTGTTCTGCCACCAGCCG GCCCGTGCCGACGCAGCCGTCGAACGCGCATGGCTCGACTGGCTCGCGCCCGCATTCCGCGAACACGGCGCGACGCCGCC GGCGTCGCTGTCGGAGATCTATACGAGCTTCGTCGCGGACGATGAAATGCTCGCGATGCTGGTCGAAGAAAAACCGGCCG TCGTGAGCTTTCATTTCGGCTTGCCGTCCGACGAGGCAATCGCGATGTTGAAGCGCGCGGGCGTCACGCTGTTCGCGACC GCGACGAATCCCGACGAAGCCCGGCAGATCGCCGCGGCCGGCATCGATGCGATCGTCGCACAGGGCATCGAGGCCGGCGG GCACCGTGGCGTGTTCGACTCGACGGCGCACGACGCTCGGCTCGGTACGTTCGCGCTCACGCGTCTGATCGTGCGCGAAT GCGCGCTGCCGGTGATCGCCGCCGGCGGCATCATGGACGGTGACGGCATCGCCGCGGCGCTCGCGCTCGGCGCGCAGGCC GCGCAGCTCGGCACCGCCTTCGTCGCGTGCCCGGAGACATCGATCGATGACGGCTATCGCCGCGCGATCCTCGGCGACGC GGCGCGCCGCACGACGTTCACGAGCGCGATCTCCGGCCGGCTCGCGCGCGGCCTCGCGAACCGGCTGACCGCGCTCGGCG ACGATCCGCACGCACCGGCCACGCCGGCCTATCCGATCGCGTACGACGCCGGCAAGGCACTGCATGCGGCCGCGAAGGCG AAAGGCGAGTTTGGCTACGGTGCACAGTGGGCCGGGCAGGCGGCGCCCCTCGTCCGGTCGCTGCCGGCGGCTGAGCTGTT CGCGACGCTCGAGCGCGAGACGCGAGCGGCCATCGCGCGGTTGCAGCACGTGCTGGACTGA
Upstream 100 bases:
>100_bases GAGCGCTGGATTTCAGAAACGCCGGTCCGCCGGCCGCCCCGCGTGCCACCCGCGGCACGCTTCCCGTTTGCGCTCGCGCC GCCCACAGGAGACGCACGAC
Downstream 100 bases:
>100_bases TTCCCGGGCCCGCGCCGCGCGCCGCGGGCTGGGCGAATGCGCAGCGATGCCACCGCAATGCGCAATGCGCAACGCACGGC GCCGGCCACAAAATTGCAAT
Product: 2-nitropropane dioxygenase
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MIPSTDNRTLLRTLGIRTPIIQAPMAGVSTPALAAAVSNAGGLGSLGVGATNADGARKMIRDTRALTDRPFNINLFCHQP ARADAAVERAWLDWLAPAFREHGATPPASLSEIYTSFVADDEMLAMLVEEKPAVVSFHFGLPSDEAIAMLKRAGVTLFAT ATNPDEARQIAAAGIDAIVAQGIEAGGHRGVFDSTAHDARLGTFALTRLIVRECALPVIAAGGIMDGDGIAAALALGAQA AQLGTAFVACPETSIDDGYRRAILGDAARRTTFTSAISGRLARGLANRLTALGDDPHAPATPAYPIAYDAGKALHAAAKA KGEFGYGAQWAGQAAPLVRSLPAAELFATLERETRAAIARLQHVLD
Sequences:
>Translated_366_residues MIPSTDNRTLLRTLGIRTPIIQAPMAGVSTPALAAAVSNAGGLGSLGVGATNADGARKMIRDTRALTDRPFNINLFCHQP ARADAAVERAWLDWLAPAFREHGATPPASLSEIYTSFVADDEMLAMLVEEKPAVVSFHFGLPSDEAIAMLKRAGVTLFAT ATNPDEARQIAAAGIDAIVAQGIEAGGHRGVFDSTAHDARLGTFALTRLIVRECALPVIAAGGIMDGDGIAAALALGAQA AQLGTAFVACPETSIDDGYRRAILGDAARRTTFTSAISGRLARGLANRLTALGDDPHAPATPAYPIAYDAGKALHAAAKA KGEFGYGAQWAGQAAPLVRSLPAAELFATLERETRAAIARLQHVLD >Mature_366_residues MIPSTDNRTLLRTLGIRTPIIQAPMAGVSTPALAAAVSNAGGLGSLGVGATNADGARKMIRDTRALTDRPFNINLFCHQP ARADAAVERAWLDWLAPAFREHGATPPASLSEIYTSFVADDEMLAMLVEEKPAVVSFHFGLPSDEAIAMLKRAGVTLFAT ATNPDEARQIAAAGIDAIVAQGIEAGGHRGVFDSTAHDARLGTFALTRLIVRECALPVIAAGGIMDGDGIAAALALGAQA AQLGTAFVACPETSIDDGYRRAILGDAARRTTFTSAISGRLARGLANRLTALGDDPHAPATPAYPIAYDAGKALHAAAKA KGEFGYGAQWAGQAAPLVRSLPAAELFATLERETRAAIARLQHVLD
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=344, Percent_Identity=31.3953488372093, Blast_Score=142, Evalue=7e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 38006; Mature: 38006
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPSTDNRTLLRTLGIRTPIIQAPMAGVSTPALAAAVSNAGGLGSLGVGATNADGARKMI CCCCCCCCHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH RDTRALTDRPFNINLFCHQPARADAAVERAWLDWLAPAFREHGATPPASLSEIYTSFVAD HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC DEMLAMLVEEKPAVVSFHFGLPSDEAIAMLKRAGVTLFATATNPDEARQIAAAGIDAIVA HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH QGIEAGGHRGVFDSTAHDARLGTFALTRLIVRECALPVIAAGGIMDGDGIAAALALGAQA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHH AQLGTAFVACPETSIDDGYRRAILGDAARRTTFTSAISGRLARGLANRLTALGDDPHAPA HHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TPAYPIAYDAGKALHAAAKAKGEFGYGAQWAGQAAPLVRSLPAAELFATLERETRAAIAR CCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH LQHVLD HHHHCC >Mature Secondary Structure MIPSTDNRTLLRTLGIRTPIIQAPMAGVSTPALAAAVSNAGGLGSLGVGATNADGARKMI CCCCCCCCHHHHHHCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH RDTRALTDRPFNINLFCHQPARADAAVERAWLDWLAPAFREHGATPPASLSEIYTSFVAD HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC DEMLAMLVEEKPAVVSFHFGLPSDEAIAMLKRAGVTLFATATNPDEARQIAAAGIDAIVA HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHH QGIEAGGHRGVFDSTAHDARLGTFALTRLIVRECALPVIAAGGIMDGDGIAAALALGAQA HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCHHHHHHHHHHHH AQLGTAFVACPETSIDDGYRRAILGDAARRTTFTSAISGRLARGLANRLTALGDDPHAPA HHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TPAYPIAYDAGKALHAAAKAKGEFGYGAQWAGQAAPLVRSLPAAELFATLERETRAAIAR CCCCCEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH LQHVLD HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA