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The map label for this gene is ydcM [C]

Identifier: 115351600

GI number: 115351600

Start: 1712983

End: 1714035

Strand: Direct

Name: ydcM [C]

Synonym: Bamb_1547

Alternate gene names: 115351600

Gene position: 1712983-1714035 (Clockwise)

Preceding gene: 115351598

Following gene: 115351603

Centisome position: 48.16

GC content: 60.21

Gene sequence:

>1053_bases
ATGATCCTTGTCTACCGCTACCGCGTGAAGTCGCTCAACGGACTGCTCAACAAGCAGAGCCGTGCGGTGAACTACGTCTG
GAACTTCTGCAATGACACGCAGAAGCACGCGCTCAAGTGGAGCAAGAAGTGGCCGACGGGATTCGATCTGAACGTGCTGA
CGACGGGGAGCAGCAAGGCGCTCGGCATCCACTCCGGCACGATCAACGCGACGTGCGAGCAATATGCGAAGTCGCGCAGT
CAGCACCGTCGGCCCTACCTGCGCTATCGCGGCAGGAAATCGCTGGGCTGGGTGCCGCTGAAGGGGCGTGACCTGAAGCG
CGAAGGCGACGCGTTCCGTTTCGCCGGCAACACGTTTCGGGTATTCCACAGCCGACCGCTTCCCGAAGGCAAGATCAAGG
ACGGGACCAACTTTGCGCAGGATGCGCGTGGCAACTGGTTTCTCAACATCGTGATCGAGATGCCCGATGTTCAAGTCCGC
CCGATCCGTTCCGGTGTCGGCATCGATCTCGGCTTGAAAGACTTCGCCACACTTTCGACGGGCGAGAAGCTGCCCAATGA
CCGATTCGGCCGACGCGCGGCGGAGAAACTGGCGAAAGCTCAACGGGCGCGCAAGCACAAGCGACATATCGCGAAGCTGC
ATGCCAAGGTCGCGAATGCCCGTGCCGATTTCCAGCACAAGCTCGCGCTCGATCTGGTGCGACGCTTTGACTACATGGCG
GTCGGTAACGTGTCGGCCGCCAAACTCGCCAGAACCAGGATGGCGAAAAGCGTCTACGACGCATCCTGGTCGTCCTTCCG
AGACAAACTCCGTTACAAGGCGATGGCGCACGGAGCCACGTTCGAGGAAGTCGACGAAAGCGGTTCTACCCAGTCCTGTT
CGTCGTGCGGATCGAAAGACAGCACGACGCGGCCGAAAGGTATCGCGGGACTGCGAATGAGAGAGTGGGCCTGCGATGGC
TGTGGTGTCGTGCATGATCGAGATACCAACGCTGCGCTGAACATTCTCCGATGCGGACGTGCATCGCCAGGTGTGGGAAT
CACCTGCCTTTAG

Upstream 100 bases:

>100_bases
GAATTCATCAGAATTTGCTCCGAGAAACCCCGCCATTGATGGCGGGAAGGAAAGGAGTGCTGTTGACAGGCAGCTTCTTG
CACGGGTTAGGATCACCGGC

Downstream 100 bases:

>100_bases
GCGGGTGAGGACGTCAATTGCATGCAATTTCCCTGAAACGTCGGATTCGAGGTCTCAACTTGCTTGACCCGGATCAGAGC
AGCGATGTGAGGTCGCTTAT

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWSKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFHSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQVR
PIRSGVGIDLGLKDFATLSTGEKLPNDRFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYMA
VGNVSAAKLARTRMAKSVYDASWSSFRDKLRYKAMAHGATFEEVDESGSTQSCSSCGSKDSTTRPKGIAGLRMREWACDG
CGVVHDRDTNAALNILRCGRASPGVGITCL

Sequences:

>Translated_350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWSKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFHSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQVR
PIRSGVGIDLGLKDFATLSTGEKLPNDRFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYMA
VGNVSAAKLARTRMAKSVYDASWSSFRDKLRYKAMAHGATFEEVDESGSTQSCSSCGSKDSTTRPKGIAGLRMREWACDG
CGVVHDRDTNAALNILRCGRASPGVGITCL
>Mature_350_residues
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWSKKWPTGFDLNVLTTGSSKALGIHSGTINATCEQYAKSRS
QHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFRVFHSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQVR
PIRSGVGIDLGLKDFATLSTGEKLPNDRFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYMA
VGNVSAAKLARTRMAKSVYDASWSSFRDKLRYKAMAHGATFEEVDESGSTQSCSSCGSKDSTTRPKGIAGLRMREWACDG
CGVVHDRDTNAALNILRCGRASPGVGITCL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=232, Percent_Identity=27.1551724137931, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 39249; Mature: 39249

Theoretical pI: Translated: 10.94; Mature: 10.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWSKKWPTGFDLNVLTTGSSKA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCE
LGIHSGTINATCEQYAKSRSQHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFR
EEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEEECCCCCCCCCCCEEEECCCEEE
VFHSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQVRPIRSGVGIDLGLKDFATLST
EEECCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCC
GEKLPNDRFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VGNVSAAKLARTRMAKSVYDASWSSFRDKLRYKAMAHGATFEEVDESGSTQSCSSCGSKD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCCC
STTRPKGIAGLRMREWACDGCGVVHDRDTNAALNILRCGRASPGVGITCL
CCCCCCCCCCCCHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCEEC
>Mature Secondary Structure
MILVYRYRVKSLNGLLNKQSRAVNYVWNFCNDTQKHALKWSKKWPTGFDLNVLTTGSSKA
CEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCCCE
LGIHSGTINATCEQYAKSRSQHRRPYLRYRGRKSLGWVPLKGRDLKREGDAFRFAGNTFR
EEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCEEECCCCCCCCCCCEEEECCCEEE
VFHSRPLPEGKIKDGTNFAQDARGNWFLNIVIEMPDVQVRPIRSGVGIDLGLKDFATLST
EEECCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHHHHCC
GEKLPNDRFGRRAAEKLAKAQRARKHKRHIAKLHAKVANARADFQHKLALDLVRRFDYMA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VGNVSAAKLARTRMAKSVYDASWSSFRDKLRYKAMAHGATFEEVDESGSTQSCSSCGSKD
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCCC
STTRPKGIAGLRMREWACDGCGVVHDRDTNAALNILRCGRASPGVGITCL
CCCCCCCCCCCCHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]