Click here to switch to the map view.

The map label for this gene is tcp [H]

Identifier: 115351561

GI number: 115351561

Start: 1652386

End: 1654149

Strand: Direct

Name: tcp [H]

Synonym: Bamb_1508

Alternate gene names: 115351561

Gene position: 1652386-1654149 (Clockwise)

Preceding gene: 115351560

Following gene: 115351562

Centisome position: 46.46

GC content: 70.98

Gene sequence:

>1764_bases
ATGGTGATCGGAAACCTGACGATACGTGCGCGCATCGGTCTGACGATGGCGTTTCTCGCGGTGCTGCTGGGATTGGTCGG
CGTGCTGGGCGTGTACGGGATGACGCGCTCGAACGACGCGACACGCGAAATCTTCACGAACCAGATGCCGAGCGCGGTCA
ACGTGGCCGTGGCGGAAATGTACGCGGCGCGTGAGCGCCTGGCGCTCGATCGCGCCGCGCTGCTGGCCGGCTCGCCTGAC
TCCGCTGCCGCGGTGGAGCGCAGCCGCGCGATGCGCACGCAGTCCGACGCGTGGTGGCAGAAGTACCTCGCGCTGCCGCG
CGGCCCGGAGGAAGACCGCCTCGCACAGGATGTCGCCGCGAAGCGGCTGGCGTTGCAGCGCAGCTGCGACGCGTTCGGAG
GCGCGATCGCGACGGGCGACCACGACCGGATCGGCGAGGGCGCCAAGCAGCTCCAGATGCTGTACAACGAGCTTTCGATC
TCGGGCGAAGCGCTGCGCAATTTCCAGTTCAGCTCCGCGCAGGCGGACTTCGACCGCGCGGAATCGGTCTACGACACGCT
GCGCGTGCTGTCGATCGTCGTGCTGGTGGCCGGCCTGGTCGCCGCGGCGCTGTCGTGGCTGACGCTCAGCCGTGCGATCG
GCCGCCCGCTCGCGGACGCGCTCGCGCATTTCGACGCGATGGCCGCGGGTGACCTGCGCCGCTCGATCGTCGTGCATCGG
CGCGACGAAATGGGCCAGCTGCTCGACGGCCTCGCGCGGATGCAGCGCGGCTTCGTCGATACGGTGCGCACGGTGCGTGG
CGGCAGCGAGTCGATCGCGACCGCGGCGCGGCAGATCGCCGCCGGCAACATCGACCTGTCCTCGCGCACGGAAGAACAGG
CGTCGGCGCTGCAGGAAACCGCGTCGAGCATGGAGCAGCTGACCGGCACGGTGAAACAGAACGCGGACAATGCGCGGCAG
GCAAGCTCGCTGGCCGCGAACGCGTCGGAGATTGCAAACAAGGGCAATACGGTGGTCGGCCAGGTGGTCGGCACGATGGG
CGAGATCAACGACAGCTCCGCGAAGATCGCGGACATCATCGCGATCATCGAGGGAATCGCGTTCCAGACCAACATCCTGG
CGCTGAACGCGGCCGTCGAAGCTGCGCGTGCGGGCGAGGAAGGGCGCGGCTTCGCGGTCGTCGCGGGCGAGGTGCGCAGC
CTCGCGCAGCGTTCGTCGAGCGCGGCCAAGGAGATCAAGGCGCTGATCGACGCGTCGGTGGACCGCATCCGCACGGGCTC
GACGCTGGTCGACGAGGCCGGTCGCACGATGAGCGACGTGATCGCGGCCGTGCAGCGCGTGACGGACATCATGGGCGAAA
TCGCGGCCGCATCGGAGGAGCAGAGCGGCGGCATCGACCAGGTCGCGCGCGCGGTCGCGCAGATGGATGAAGTCACGCAG
CAGAACGCCGCGCTCGTCGAGGAAGCGGCGGCCGCCGCGCAGTCGCTCGACGAACAGGCCGCGCGCCTGCGCGACACGGC
GGCGGTCTTCCGGATCGACGACGATGCGGCGCAGCCGGCAGCCGCTCCCGCTGCACGTCAGGCGCCGCGCGCGGTGCCCG
CGCCGGCTGCCGTGCCGGTGAGCTCGGCCGCACCGGCCGCGGCGCGCGACGATCGCGACGCAACGCCCAAGCGTGCGGCG
CCGGTGCGCAAGCCGGCGGGCGCGCCCGCAGCGCCTGCGCCGGCCGCCGCGACTGCCGGCGGGGACGACTGGGAAACGTT
CTGA

Upstream 100 bases:

>100_bases
CATCAAGTCGTGCGGCGAACGGTCGTAAATGCATCGGGGCGAAACACTGTTTCGAAAAACGGGCGCGGCCCGTTCATGAC
GACGCAACACAGGAAGAATG

Downstream 100 bases:

>100_bases
TTCGCGGCGCGCCGCGCCTCTATTCCTAGCGCATCTTTCCCTCGCATCTTTCCCTATTTGGCAGCACACGACGCCCGCTA
CTGCGGGCGTCGTCGTTTCG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: Citrate chemoreceptor protein [H]

Number of amino acids: Translated: 587; Mature: 587

Protein sequence:

>587_residues
MVIGNLTIRARIGLTMAFLAVLLGLVGVLGVYGMTRSNDATREIFTNQMPSAVNVAVAEMYAARERLALDRAALLAGSPD
SAAAVERSRAMRTQSDAWWQKYLALPRGPEEDRLAQDVAAKRLALQRSCDAFGGAIATGDHDRIGEGAKQLQMLYNELSI
SGEALRNFQFSSAQADFDRAESVYDTLRVLSIVVLVAGLVAAALSWLTLSRAIGRPLADALAHFDAMAAGDLRRSIVVHR
RDEMGQLLDGLARMQRGFVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQASALQETASSMEQLTGTVKQNADNARQ
ASSLAANASEIANKGNTVVGQVVGTMGEINDSSAKIADIIAIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRS
LAQRSSSAAKEIKALIDASVDRIRTGSTLVDEAGRTMSDVIAAVQRVTDIMGEIAAASEEQSGGIDQVARAVAQMDEVTQ
QNAALVEEAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPVSSAAPAAARDDRDATPKRAA
PVRKPAGAPAAPAPAAATAGGDDWETF

Sequences:

>Translated_587_residues
MVIGNLTIRARIGLTMAFLAVLLGLVGVLGVYGMTRSNDATREIFTNQMPSAVNVAVAEMYAARERLALDRAALLAGSPD
SAAAVERSRAMRTQSDAWWQKYLALPRGPEEDRLAQDVAAKRLALQRSCDAFGGAIATGDHDRIGEGAKQLQMLYNELSI
SGEALRNFQFSSAQADFDRAESVYDTLRVLSIVVLVAGLVAAALSWLTLSRAIGRPLADALAHFDAMAAGDLRRSIVVHR
RDEMGQLLDGLARMQRGFVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQASALQETASSMEQLTGTVKQNADNARQ
ASSLAANASEIANKGNTVVGQVVGTMGEINDSSAKIADIIAIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRS
LAQRSSSAAKEIKALIDASVDRIRTGSTLVDEAGRTMSDVIAAVQRVTDIMGEIAAASEEQSGGIDQVARAVAQMDEVTQ
QNAALVEEAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPVSSAAPAAARDDRDATPKRAA
PVRKPAGAPAAPAPAAATAGGDDWETF
>Mature_587_residues
MVIGNLTIRARIGLTMAFLAVLLGLVGVLGVYGMTRSNDATREIFTNQMPSAVNVAVAEMYAARERLALDRAALLAGSPD
SAAAVERSRAMRTQSDAWWQKYLALPRGPEEDRLAQDVAAKRLALQRSCDAFGGAIATGDHDRIGEGAKQLQMLYNELSI
SGEALRNFQFSSAQADFDRAESVYDTLRVLSIVVLVAGLVAAALSWLTLSRAIGRPLADALAHFDAMAAGDLRRSIVVHR
RDEMGQLLDGLARMQRGFVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQASALQETASSMEQLTGTVKQNADNARQ
ASSLAANASEIANKGNTVVGQVVGTMGEINDSSAKIADIIAIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRS
LAQRSSSAAKEIKALIDASVDRIRTGSTLVDEAGRTMSDVIAAVQRVTDIMGEIAAASEEQSGGIDQVARAVAQMDEVTQ
QNAALVEEAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPVSSAAPAAARDDRDATPKRAA
PVRKPAGAPAAPAPAAATAGGDDWETF

Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=344, Percent_Identity=59.8837209302326, Blast_Score=354, Evalue=8e-99,
Organism=Escherichia coli, GI1788194, Length=535, Percent_Identity=42.9906542056075, Blast_Score=349, Evalue=3e-97,
Organism=Escherichia coli, GI2367378, Length=553, Percent_Identity=44.3037974683544, Blast_Score=332, Evalue=6e-92,
Organism=Escherichia coli, GI1787690, Length=495, Percent_Identity=43.4343434343434, Blast_Score=309, Evalue=3e-85,
Organism=Escherichia coli, GI1789453, Length=327, Percent_Identity=40.0611620795107, Blast_Score=218, Evalue=8e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR003122
- InterPro:   IPR004091
- InterPro:   IPR004089
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 61245; Mature: 61245

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIGNLTIRARIGLTMAFLAVLLGLVGVLGVYGMTRSNDATREIFTNQMPSAVNVAVAEM
CEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
YAARERLALDRAALLAGSPDSAAAVERSRAMRTQSDAWWQKYLALPRGPEEDRLAQDVAA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH
KRLALQRSCDAFGGAIATGDHDRIGEGAKQLQMLYNELSISGEALRNFQFSSAQADFDRA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHH
ESVYDTLRVLSIVVLVAGLVAAALSWLTLSRAIGRPLADALAHFDAMAAGDLRRSIVVHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDEMGQLLDGLARMQRGFVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQASALQET
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ASSMEQLTGTVKQNADNARQASSLAANASEIANKGNTVVGQVVGTMGEINDSSAKIADII
HHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
AIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSSSAAKEIKALIDASV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIRTGSTLVDEAGRTMSDVIAAVQRVTDIMGEIAAASEEQSGGIDQVARAVAQMDEVTQ
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
QNAALVEEAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
SSAAPAAARDDRDATPKRAAPVRKPAGAPAAPAPAAATAGGDDWETF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVIGNLTIRARIGLTMAFLAVLLGLVGVLGVYGMTRSNDATREIFTNQMPSAVNVAVAEM
CEECCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
YAARERLALDRAALLAGSPDSAAAVERSRAMRTQSDAWWQKYLALPRGPEEDRLAQDVAA
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHH
KRLALQRSCDAFGGAIATGDHDRIGEGAKQLQMLYNELSISGEALRNFQFSSAQADFDRA
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHH
ESVYDTLRVLSIVVLVAGLVAAALSWLTLSRAIGRPLADALAHFDAMAAGDLRRSIVVHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDEMGQLLDGLARMQRGFVDTVRTVRGGSESIATAARQIAAGNIDLSSRTEEQASALQET
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
ASSMEQLTGTVKQNADNARQASSLAANASEIANKGNTVVGQVVGTMGEINDSSAKIADII
HHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHH
AIIEGIAFQTNILALNAAVEAARAGEEGRGFAVVAGEVRSLAQRSSSAAKEIKALIDASV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
DRIRTGSTLVDEAGRTMSDVIAAVQRVTDIMGEIAAASEEQSGGIDQVARAVAQMDEVTQ
HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
QNAALVEEAAAAAQSLDEQAARLRDTAAVFRIDDDAAQPAAAPAARQAPRAVPAPAAVPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
SSAAPAAARDDRDATPKRAAPVRKPAGAPAAPAPAAATAGGDDWETF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8419927; 11677609 [H]