The gene/protein map for NC_008390 is currently unavailable.
Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115351490

Identifier: 115351490

GI number: 115351490

Start: 1587821

End: 1588300

Strand: Direct

Name: 115351490

Synonym: Bamb_1437

Alternate gene names: NA

Gene position: 1587821-1588300 (Clockwise)

Preceding gene: 115351489

Following gene: 115351491

Centisome position: 44.65

GC content: 72.29

Gene sequence:

>480_bases
ATGATGCGCGCCCGCTTGATCCCGTTCGCGGCCGCGCTCGCGCTGGCCGCCGCTTGCGTCGCGGGCGGCAGCGTCGCGCG
GGAAGGCGCCGGCCAGGCGCCGATCGTCGACGTCTTTCCGGCGCAGAACTGGGCGTCGCTCGGTGCGGAGCCGGCGAACG
ACAGCCCGCCGCCGCCTGTCGCGGAGCCCGAACCCGAACCGCCGTCGCTCGACGAGCCGATCGACGCGCAGCCGGTCGCG
GAGCCGCCATTCGCCATTGCCGGCGAATGGCGCGAGAACGACCAGCGCATCGTCGTGCTGGAAGGCGCGGGCAAAACGTT
CCTGCTGTGCGCATCGCGCTGCGGCGTGCGAGACGCCGTGCTGCCGGGCGGCGAGATCGCCGAAGGATACCGGCTGAAGA
AACTGGGCGAACAGGGCGCGGTGACCGTGACCCGGGACAGCACCGATATCGAGCTGTCGCCGCTCGTCCCGACCCGATGA

Upstream 100 bases:

>100_bases
AGCCGATGGTGCGCATCGAAGGCGTGTCGATCGAACGCGACCGGATCGACAGCGCCAGCGTGAGCGCCGACCTGCGGGTC
AGCCTGCTGGGGCCGGACAC

Downstream 100 bases:

>100_bases
ACCCCGAATTCAATTTAGGCCGAACACCATCATGAAACGTAAAGTCAGTCTGTTGCTCCTGATCTCGGCGCTCGCGCTGA
CAGGATGCGCGAGTTCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA
EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR

Sequences:

>Translated_159_residues
MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA
EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR
>Mature_159_residues
MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA
EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16531; Mature: 16531

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPV
CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC
AEPEPEPPSLDEPIDAQPVAEPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAV
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC
LPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR
CCCCCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCCC
>Mature Secondary Structure
MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPV
CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC
AEPEPEPPSLDEPIDAQPVAEPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAV
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC
LPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR
CCCCCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA