| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351490
Identifier: 115351490
GI number: 115351490
Start: 1587821
End: 1588300
Strand: Direct
Name: 115351490
Synonym: Bamb_1437
Alternate gene names: NA
Gene position: 1587821-1588300 (Clockwise)
Preceding gene: 115351489
Following gene: 115351491
Centisome position: 44.65
GC content: 72.29
Gene sequence:
>480_bases ATGATGCGCGCCCGCTTGATCCCGTTCGCGGCCGCGCTCGCGCTGGCCGCCGCTTGCGTCGCGGGCGGCAGCGTCGCGCG GGAAGGCGCCGGCCAGGCGCCGATCGTCGACGTCTTTCCGGCGCAGAACTGGGCGTCGCTCGGTGCGGAGCCGGCGAACG ACAGCCCGCCGCCGCCTGTCGCGGAGCCCGAACCCGAACCGCCGTCGCTCGACGAGCCGATCGACGCGCAGCCGGTCGCG GAGCCGCCATTCGCCATTGCCGGCGAATGGCGCGAGAACGACCAGCGCATCGTCGTGCTGGAAGGCGCGGGCAAAACGTT CCTGCTGTGCGCATCGCGCTGCGGCGTGCGAGACGCCGTGCTGCCGGGCGGCGAGATCGCCGAAGGATACCGGCTGAAGA AACTGGGCGAACAGGGCGCGGTGACCGTGACCCGGGACAGCACCGATATCGAGCTGTCGCCGCTCGTCCCGACCCGATGA
Upstream 100 bases:
>100_bases AGCCGATGGTGCGCATCGAAGGCGTGTCGATCGAACGCGACCGGATCGACAGCGCCAGCGTGAGCGCCGACCTGCGGGTC AGCCTGCTGGGGCCGGACAC
Downstream 100 bases:
>100_bases ACCCCGAATTCAATTTAGGCCGAACACCATCATGAAACGTAAAGTCAGTCTGTTGCTCCTGATCTCGGCGCTCGCGCTGA CAGGATGCGCGAGTTCCCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 159
Protein sequence:
>159_residues MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR
Sequences:
>Translated_159_residues MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR >Mature_159_residues MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPVAEPEPEPPSLDEPIDAQPVA EPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAVLPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16531; Mature: 16531
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPV CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC AEPEPEPPSLDEPIDAQPVAEPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAV CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC LPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR CCCCCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCCC >Mature Secondary Structure MMRARLIPFAAALALAAACVAGGSVAREGAGQAPIVDVFPAQNWASLGAEPANDSPPPPV CCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCC AEPEPEPPSLDEPIDAQPVAEPPFAIAGEWRENDQRIVVLEGAGKTFLLCASRCGVRDAV CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCCCCC LPGGEIAEGYRLKKLGEQGAVTVTRDSTDIELSPLVPTR CCCCCCCCCCHHHHCCCCCCEEEEECCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA