| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is pilQ [H]
Identifier: 115351491
GI number: 115351491
Start: 1588332
End: 1590770
Strand: Direct
Name: pilQ [H]
Synonym: Bamb_1438
Alternate gene names: 115351491
Gene position: 1588332-1590770 (Clockwise)
Preceding gene: 115351490
Following gene: 115351492
Centisome position: 44.66
GC content: 69.0
Gene sequence:
>2439_bases ATGAAACGTAAAGTCAGTCTGTTGCTCCTGATCTCGGCGCTCGCGCTGACAGGATGCGCGAGTTCCCCGTTCAACGCCGC GCCCGACGCCGCCGCGACGCCCGCCGAACGACTCGGCACGCTGCAGCAGCAGCGTGAGGCCGCGCCGGACGACATCGCGC TCACGACCGCCGTCGAATTCAGCCGGCACGATTACGTGCGCGCGGAGCTGAAGGAAGCCGACCGCCAGATCGCACAGGGC AACCATGCGGCCGCGATCGATCACCTGGACAACGTGCTGGACGAGGACCCGGGCAACCTCAAGGCCAGCCAGGCGCTCGA GCAGGTCAAGCGCCGCCAGCAGATGGCGGTCGACCTCGCGCGCGCGCAGCGCATCGGCGGCGAACAGCCGCAGGAGGCGC TCGAGATCGCGCGGCGCATTCTCGCCGAGCAGCCCAACCACGCGGACGCGAAGCGCCTGCGCGACAGGCTGCTGCGTCAG TCGCAGGCCAGCCGGGCGGTGCGGCCGCAGTTGTCCGACGCGCTGCGCAAGCCGGTGTCGCTCAACTTCAAGCAGCAGCC GCTTGCGAACATCTTCGACGTGATCTCGCGCGTGTCCGGCGTGAACTTCGTGTTCGACCGCGACGTCGACACCAGCCATG CCGCGACGTTGTTCGCGGAACGCACGACCGCCGAGGATGCGATCAACCTGTTGCTGCGCACCAACCAGCTCGAGAAGAAG GTGCTCGACCGGCACACGCTGCTCGTCTACCCGTCGCAGCCCGAAAAGGCACGCAACTACACGGAGTTCGCGATCCGGAC GTTCTTCCTGTCGCATGCGGACGCGAAGTCGGTGATGGCCGCGCTGCGCCAGATGATCAAGCCGAAGGACGTCTACGTGG ACGAGCGGGTGAATGCGGTCGTCATGCGCGACACGCCGGAGACGATCCAGGTCGCGGAGCGCGTCGTGATGGGCCTCGAC ATTCCTCAATCCGAGGTGACGCTCGACGTGCAGGTGCTCGAGGTCAACATGAACGACAGCCTCGATCTCGGCGTCCAGTA TCCGGGCAAGATCCAGTTCAACGCGCTCGGCGGCGTGGAGGGCGGCGCGCTGACGCTCGGCGACCTGCTGCGCCTGAATC GCGACCGCGTCGGCGTATCGAGCGAATCGGGCGGGCTCGCGCTCGCGATCGACCTGCTGCAGAAACAAGGCAAGACCAAG ACGCTCGCGAATCCGAAGATCCGCGTGCGCAACATGGAGAAGGCCAACATCAAGATCGGCGAGCGCGTGCCGATCGTCAC GACCACCAACGCGAACGGCGTCGTGACCGAATCGGTCAGCTACCAGGACGTTGGGCTGATGCTGAAGGTCGAGCCGCGCA TCAGCCTGAACGAGGAGGTGAGCGTCAAGGTGAACATGGAGGTCAGCAGCATCCTGACGAAGGAAACCACGAAGACCGGG CTCGTCGCCTATTCGCTCGGCACGCGCAATGCGGAGACGCTGATGACCGCGAAGAACGGCGAAACGCAGATCCTTGCCGG CCTCGTCAAGCGTAACGAAAGCGACAGCGTGGCGGGGCTGCCGGGCGTATCGGGCTTGCCGGTGCTCGGCAGACTGTTCG GTTCGAACGGCCGCAGCAACGAGCGCTCGGAGATCGTGCTGCTCATCACGCCGCATATCGAGCGCAATCTCGACCTGCCG ATGTCGGCAGTGACGACCTTCCTGTCGGGCACCGAGTCGCGCGTGACCACCGAAGCGCTGACGCTCGAGTCCGCGCAGGC CGTGCCGGCGCGCCTGCCGTCGTCGGACGGCCCGGATCTGGACGCGCCGATCGAGCCGGCGACGCCGGTGGGCCAGCGCG CGGCCGCGGAGCCTGAAACAGCCGACGCGGCCAAGGCAGAGCCGCAAGCGGGCGTGGCGGCCGGGCAGGATGAGACGGCG GCCCCGATGGTCGAGCACGACAAGCGCGGCGCGGGGATGATGCGCACGCGTTCGGATGCCGGGCCGCAGCCGGCCCGGGC AATCAAGATCGCAGAGGCCGAGGCAGCGGGCACCGTCGCGGCGAACCGCCGTGCGGTGCCGCCGCGAGGGGCGGTGACGC GGGCAGTCGCTTCCGCGGCGAAGGCGACCGAGTTGCGTGCGGCCATCGCCGCCGCGCGAATCGAGCTGGATCGCGCGGGC GACGTCGACGCGGCGCCGCGCATTGCTCAACCGGGCGCGATCGTGCGCGCGGCGGCGCCGCGGACGGCGGCCGAGGCGAC GGCGGCACGCGCGCCGGCCGCCGCTTCGCAGGCCGCCGCTTCGCAGGCACGCGGTGAACGCGGCATCGTCGCCGCCGTCC GCTCGCTGATCGGCACGCTGCAGGCGTTCGTCGATCACGTCGTGGGCGAACGCGAACCGGCGCTGCCGCTGTATGCCGAC GCGCCGATGCTGCTGTCGCGCGCGCGGGGCTTCGCGTGA
Upstream 100 bases:
>100_bases CAGGGCGCGGTGACCGTGACCCGGGACAGCACCGATATCGAGCTGTCGCCGCTCGTCCCGACCCGATGAACCCCGAATTC AATTTAGGCCGAACACCATC
Downstream 100 bases:
>100_bases ACGGGCGTCGACGCGCACGCGGCTTCACGCTGATCGAACTGATGGTGGCGATGTCGCTGCTCGCGTTGCTCGCGACCGTC GCGCTGCCGTTGACCGATCT
Product: type II and III secretion system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MKRKVSLLLLISALALTGCASSPFNAAPDAAATPAERLGTLQQQREAAPDDIALTTAVEFSRHDYVRAELKEADRQIAQG NHAAAIDHLDNVLDEDPGNLKASQALEQVKRRQQMAVDLARAQRIGGEQPQEALEIARRILAEQPNHADAKRLRDRLLRQ SQASRAVRPQLSDALRKPVSLNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLFAERTTAEDAINLLLRTNQLEKK VLDRHTLLVYPSQPEKARNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMGLD IPQSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALAIDLLQKQGKTK TLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTG LVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLDLP MSAVTTFLSGTESRVTTEALTLESAQAVPARLPSSDGPDLDAPIEPATPVGQRAAAEPETADAAKAEPQAGVAAGQDETA APMVEHDKRGAGMMRTRSDAGPQPARAIKIAEAEAAGTVAANRRAVPPRGAVTRAVASAAKATELRAAIAAARIELDRAG DVDAAPRIAQPGAIVRAAAPRTAAEATAARAPAAASQAAASQARGERGIVAAVRSLIGTLQAFVDHVVGEREPALPLYAD APMLLSRARGFA
Sequences:
>Translated_812_residues MKRKVSLLLLISALALTGCASSPFNAAPDAAATPAERLGTLQQQREAAPDDIALTTAVEFSRHDYVRAELKEADRQIAQG NHAAAIDHLDNVLDEDPGNLKASQALEQVKRRQQMAVDLARAQRIGGEQPQEALEIARRILAEQPNHADAKRLRDRLLRQ SQASRAVRPQLSDALRKPVSLNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLFAERTTAEDAINLLLRTNQLEKK VLDRHTLLVYPSQPEKARNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMGLD IPQSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALAIDLLQKQGKTK TLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTG LVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLDLP MSAVTTFLSGTESRVTTEALTLESAQAVPARLPSSDGPDLDAPIEPATPVGQRAAAEPETADAAKAEPQAGVAAGQDETA APMVEHDKRGAGMMRTRSDAGPQPARAIKIAEAEAAGTVAANRRAVPPRGAVTRAVASAAKATELRAAIAAARIELDRAG DVDAAPRIAQPGAIVRAAAPRTAAEATAARAPAAASQAAASQARGERGIVAAVRSLIGTLQAFVDHVVGEREPALPLYAD APMLLSRARGFA >Mature_812_residues MKRKVSLLLLISALALTGCASSPFNAAPDAAATPAERLGTLQQQREAAPDDIALTTAVEFSRHDYVRAELKEADRQIAQG NHAAAIDHLDNVLDEDPGNLKASQALEQVKRRQQMAVDLARAQRIGGEQPQEALEIARRILAEQPNHADAKRLRDRLLRQ SQASRAVRPQLSDALRKPVSLNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLFAERTTAEDAINLLLRTNQLEKK VLDRHTLLVYPSQPEKARNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVDERVNAVVMRDTPETIQVAERVVMGLD IPQSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALAIDLLQKQGKTK TLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTG LVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLDLP MSAVTTFLSGTESRVTTEALTLESAQAVPARLPSSDGPDLDAPIEPATPVGQRAAAEPETADAAKAEPQAGVAAGQDETA APMVEHDKRGAGMMRTRSDAGPQPARAIKIAEAEAAGTVAANRRAVPPRGAVTRAVASAAKATELRAAIAAARIELDRAG DVDAAPRIAQPGAIVRAAAPRTAAEATAARAPAAASQAAASQARGERGIVAAVRSLIGTLQAFVDHVVGEREPALPLYAD APMLLSRARGFA
Specific function: Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA [H]
COG id: COG4796
COG function: function code U; Type II secretory pathway, component HofQ
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI1789793, Length=400, Percent_Identity=24.25, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI87082242, Length=378, Percent_Identity=24.3386243386243, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR013355 - InterPro: IPR011662 - InterPro: IPR004846 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N; PF07660 STN [H]
EC number: NA
Molecular weight: Translated: 86699; Mature: 86699
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRKVSLLLLISALALTGCASSPFNAAPDAAATPAERLGTLQQQREAAPDDIALTTAVEF CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHH SRHDYVRAELKEADRQIAQGNHAAAIDHLDNVLDEDPGNLKASQALEQVKRRQQMAVDLA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH RAQRIGGEQPQEALEIARRILAEQPNHADAKRLRDRLLRQSQASRAVRPQLSDALRKPVS HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC LNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLFAERTTAEDAINLLLRTNQLEKK CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VLDRHTLLVYPSQPEKARNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVDERVNAV HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCEE VMRDTPETIQVAERVVMGLDIPQSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVE EEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEECCCCCCEEEEEECCCCC GGALTLGDLLRLNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIG CCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCEEEECCCCCCCEEC ERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTG CCCCEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCC LVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSN EEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC ERSEIVLLITPHIERNLDLPMSAVTTFLSGTESRVTTEALTLESAQAVPARLPSSDGPDL CCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC DAPIEPATPVGQRAAAEPETADAAKAEPQAGVAAGQDETAAPMVEHDKRGAGMMRTRSDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCC GPQPARAIKIAEAEAAGTVAANRRAVPPRGAVTRAVASAAKATELRAAIAAARIELDRAG CCCCCCEEEEECCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC DVDAAPRIAQPGAIVRAAAPRTAAEATAARAPAAASQAAASQARGERGIVAAVRSLIGTL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH QAFVDHVVGEREPALPLYADAPMLLSRARGFA HHHHHHHHCCCCCCCCEECCCHHHHHHHCCCC >Mature Secondary Structure MKRKVSLLLLISALALTGCASSPFNAAPDAAATPAERLGTLQQQREAAPDDIALTTAVEF CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHH SRHDYVRAELKEADRQIAQGNHAAAIDHLDNVLDEDPGNLKASQALEQVKRRQQMAVDLA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH RAQRIGGEQPQEALEIARRILAEQPNHADAKRLRDRLLRQSQASRAVRPQLSDALRKPVS HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCC LNFKQQPLANIFDVISRVSGVNFVFDRDVDTSHAATLFAERTTAEDAINLLLRTNQLEKK CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VLDRHTLLVYPSQPEKARNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVDERVNAV HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEECCCCCEE VMRDTPETIQVAERVVMGLDIPQSEVTLDVQVLEVNMNDSLDLGVQYPGKIQFNALGGVE EEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEECCCCCCEEEEEECCCCC GGALTLGDLLRLNRDRVGVSSESGGLALAIDLLQKQGKTKTLANPKIRVRNMEKANIKIG CCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCCEEEECCCCCCCEEC ERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLNEEVSVKVNMEVSSILTKETTKTG CCCCEEEECCCCCEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECHHHHHHHHHCCCCC LVAYSLGTRNAETLMTAKNGETQILAGLVKRNESDSVAGLPGVSGLPVLGRLFGSNGRSN EEEEECCCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC ERSEIVLLITPHIERNLDLPMSAVTTFLSGTESRVTTEALTLESAQAVPARLPSSDGPDL CCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC DAPIEPATPVGQRAAAEPETADAAKAEPQAGVAAGQDETAAPMVEHDKRGAGMMRTRSDA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEECCCC GPQPARAIKIAEAEAAGTVAANRRAVPPRGAVTRAVASAAKATELRAAIAAARIELDRAG CCCCCCEEEEECCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC DVDAAPRIAQPGAIVRAAAPRTAAEATAARAPAAASQAAASQARGERGIVAAVRSLIGTL CCCCCCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH QAFVDHVVGEREPALPLYADAPMLLSRARGFA HHHHHHHHCCCCCCCCEECCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]