| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115351489
Identifier: 115351489
GI number: 115351489
Start: 1587270
End: 1587824
Strand: Direct
Name: 115351489
Synonym: Bamb_1436
Alternate gene names: NA
Gene position: 1587270-1587824 (Clockwise)
Preceding gene: 115351488
Following gene: 115351490
Centisome position: 44.63
GC content: 68.11
Gene sequence:
>555_bases ATGACGAACCTGAAAGCAATCGACATGACGGCGCTTGCCGCGCGGCTGCGCTGGGGCGCCTATGCGGCGGCCCGCAAGCT CGGCGCAGCGGGGCTGCTGGCGGCCGGGCTGGTCGTGGCGCTGGTCGGCGCGCACGCGCTCTACCTGCAACCGGACAGCG AGCGTCTCGAGGCCGAGCACGACGCGCGCACGAAGGAACTGGCCGCGTTGCCGCAGGTGGCCCGCAAGGCTGGCGCCGAC GGCCTGACGCTGCAGCAGGTCCAGCAATTACGCAGCAGCGAGCAGGCTTACTCGATTTTCCAGATCCTGTCGCAGCACGG CATGGATCGCAAGCACGCGACTTATCGCCGCGAAGTCGAAGTGAAGGGCAAGCTGCGCCGGCTCACGATCAGCATCGCGA TGAGCGGCAGCTATGTCGGGCTGCGCGAAGCCATGCGCGAGATTGCGAGCCAGCCGATGGTGCGCATCGAAGGCGTGTCG ATCGAACGCGACCGGATCGACAGCGCCAGCGTGAGCGCCGACCTGCGGGTCAGCCTGCTGGGGCCGGACACATGA
Upstream 100 bases:
>100_bases ACGATCGTCACCCGGACCGCAAGATCGGCCTGCTGCAGCACCGCACGAAAGCGGAGGACGGCAAGGACATCTTTCATTTC AGCCTGAGCATCGAACACCC
Downstream 100 bases:
>100_bases TGCGCGCCCGCTTGATCCCGTTCGCGGCCGCGCTCGCGCTGGCCGCCGCTTGCGTCGCGGGCGGCAGCGTCGCGCGGGAA GGCGCCGGCCAGGCGCCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 183
Protein sequence:
>184_residues MTNLKAIDMTALAARLRWGAYAAARKLGAAGLLAAGLVVALVGAHALYLQPDSERLEAEHDARTKELAALPQVARKAGAD GLTLQQVQQLRSSEQAYSIFQILSQHGMDRKHATYRREVEVKGKLRRLTISIAMSGSYVGLREAMREIASQPMVRIEGVS IERDRIDSASVSADLRVSLLGPDT
Sequences:
>Translated_184_residues MTNLKAIDMTALAARLRWGAYAAARKLGAAGLLAAGLVVALVGAHALYLQPDSERLEAEHDARTKELAALPQVARKAGAD GLTLQQVQQLRSSEQAYSIFQILSQHGMDRKHATYRREVEVKGKLRRLTISIAMSGSYVGLREAMREIASQPMVRIEGVS IERDRIDSASVSADLRVSLLGPDT >Mature_183_residues TNLKAIDMTALAARLRWGAYAAARKLGAAGLLAAGLVVALVGAHALYLQPDSERLEAEHDARTKELAALPQVARKAGADG LTLQQVQQLRSSEQAYSIFQILSQHGMDRKHATYRREVEVKGKLRRLTISIAMSGSYVGLREAMREIASQPMVRIEGVSI ERDRIDSASVSADLRVSLLGPDT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19992; Mature: 19861
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLKAIDMTALAARLRWGAYAAARKLGAAGLLAAGLVVALVGAHALYLQPDSERLEAEH CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHH DARTKELAALPQVARKAGADGLTLQQVQQLRSSEQAYSIFQILSQHGMDRKHATYRREVE HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VKGKLRRLTISIAMSGSYVGLREAMREIASQPMVRIEGVSIERDRIDSASVSADLRVSLL HCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCEECHHCCCCCCCCCCEEEEEE GPDT CCCC >Mature Secondary Structure TNLKAIDMTALAARLRWGAYAAARKLGAAGLLAAGLVVALVGAHALYLQPDSERLEAEH CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHH DARTKELAALPQVARKAGADGLTLQQVQQLRSSEQAYSIFQILSQHGMDRKHATYRREVE HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH VKGKLRRLTISIAMSGSYVGLREAMREIASQPMVRIEGVSIERDRIDSASVSADLRVSLL HCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCEEEECCEECHHCCCCCCCCCCEEEEEE GPDT CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA