Click here to switch to the map view.

The map label for this gene is ycgE [C]

Identifier: 115351419

GI number: 115351419

Start: 1500587

End: 1501000

Strand: Direct

Name: ycgE [C]

Synonym: Bamb_1366

Alternate gene names: 115351419

Gene position: 1500587-1501000 (Clockwise)

Preceding gene: 115351418

Following gene: 115351421

Centisome position: 42.19

GC content: 64.49

Gene sequence:

>414_bases
ATGACCACTACGGTTGAGAAAGTCGTCTTGCCTCCGATTCCCGCGAAGCGCTACTTCACGATCGGTGAGGTCAGTGAGCT
GTGCGGGGTCAAGCCGCACGTGCTGCGTTACTGGGAACAGGAATTCACGCAGTTGCGGCCGGTGAAGCGGCGAGGCAATC
GCCGGTATTACCAGCATCACGAAGTGCTGCTGATCCGGCGGATTCGCGAGCTGCTGTACGAACAGGGGTTCACGATCAAC
GGAGCGCGCAACCGGCTCGATTCGCCGGGCAGCGAACGCGGCGCCCCGGCGCCGGCCGAGCCGGACGTGGCCGGTGCCGA
TGAGCGTGCGCCGGGCCAGCAGGGAGAGACGGTCGATGTGAACGCGTTGCGGCAGGCGCTCCTCGACGTGATCGATGGAT
TGAAGCGCGACTGA

Upstream 100 bases:

>100_bases
CAGAAGCTGAAGGCGCTGGTCGAAAACGGCGTGGAATGACGCCCGCGCGTTGACGTCTCCGCGCGGCCGCCGCGCACCCT
TTACCGACGGTTAACCGACG

Downstream 100 bases:

>100_bases
GCGTCACTGAGCGCGACGCTCGAAACAAACAAAGCCCGGTTGGCGAAGTGCCACCGGGCTTTTTTCATGCGCGCGGGCCC
ACGCTGTCAGCGCGATGCGA

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator MerR Family Protein; MerR-Family Transcriptional Regulator; Transcriptional Regulator Merr Family; Regulatory Protein MerR; MerR Family Regulatory Protein; TRANSCRIPTIONal REGULATOR MerR Family; Regulatory Protein Merr; MerR Family Regulatory Family; Transcriptional Regulator Protein; Bacterial Transferase Hexapeptide Repeat Protein; Transcriptional Regulator Domain-Containing Protein

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MTTTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTIN
GARNRLDSPGSERGAPAPAEPDVAGADERAPGQQGETVDVNALRQALLDVIDGLKRD

Sequences:

>Translated_137_residues
MTTTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTIN
GARNRLDSPGSERGAPAPAEPDVAGADERAPGQQGETVDVNALRQALLDVIDGLKRD
>Mature_136_residues
TTTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRPVKRRGNRRYYQHHEVLLIRRIRELLYEQGFTING
ARNRLDSPGSERGAPAPAEPDVAGADERAPGQQGETVDVNALRQALLDVIDGLKRD

Specific function: Unknown

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15574; Mature: 15443

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRPVKRRGNRRYYQHH
CCCCCCHHCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVLLIRRIRELLYEQGFTINGARNRLDSPGSERGAPAPAEPDVAGADERAPGQQGETVDV
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECH
NALRQALLDVIDGLKRD
HHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTTVEKVVLPPIPAKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRPVKRRGNRRYYQHH
CCCCCHHCCCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
EVLLIRRIRELLYEQGFTINGARNRLDSPGSERGAPAPAEPDVAGADERAPGQQGETVDV
HHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECH
NALRQALLDVIDGLKRD
HHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA