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The map label for this gene is ihfA

Identifier: 115351418

GI number: 115351418

Start: 1500130

End: 1500525

Strand: Direct

Name: ihfA

Synonym: Bamb_1365

Alternate gene names: 115351418

Gene position: 1500130-1500525 (Clockwise)

Preceding gene: 115351417

Following gene: 115351419

Centisome position: 42.18

GC content: 62.37

Gene sequence:

>396_bases
ATGGCAGATATGAACGACATGACCTCGAGTGAATTCGAAGCCCTCCTGACGGCGCAACGCAGCGCCATGAACCGCGACGC
TTCGGCGCCGGCGTCCACCGAGACGCCGACGCTGACGAAAGCGGAACTGGCGGAGCTGCTGTTCGACAGCGTCGGGCTGA
ACAAGCGTGAAGCGAAGGACATGGTCGAGGCTTTTTTCGAAGTGATCCGCGACGCGCTCGAAAACGGTGAAAGCGTCAAG
CTGTCGGGATTCGGCAATTTCCAGCTGCGCGACAAGCCGCAGCGTCCGGGCCGCAATCCGAAGACGGGCGAGGCGATTCC
GATCGCGGCCCGCCGGGTGGTAACCTTCCACGCGAGCCAGAAGCTGAAGGCGCTGGTCGAAAACGGCGTGGAATGA

Upstream 100 bases:

>100_bases
GCGAATGGCTCGTGCCGGTGCCCGCCTGCGCGGCTAAGGAGAGGGGCCGCCCGTTGGCGGGCGGCTTTTTCCCCTCGCAA
GTTTTGGTTTAACGCGCTGT

Downstream 100 bases:

>100_bases
CGCCCGCGCGTTGACGTCTCCGCGCGGCCGCCGCGCACCCTTTACCGACGGTTAACCGACGATGACCACTACGGTTGAGA
AAGTCGTCTTGCCTCCGATT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MADMNDMTSSEFEALLTAQRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVK
LSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE

Sequences:

>Translated_131_residues
MADMNDMTSSEFEALLTAQRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVK
LSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE
>Mature_130_residues
ADMNDMTSSEFEALLTAQRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKDMVEAFFEVIRDALENGESVKL
SGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQKLKALVENGVE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=75.8241758241758, Blast_Score=142, Evalue=1e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786644, Length=86, Percent_Identity=33.7209302325581, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 14341; Mature: 14210

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMNDMTSSEFEALLTAQRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKD
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
MVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQ
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KLKALVENGVE
HHHHHHHCCCC
>Mature Secondary Structure 
ADMNDMTSSEFEALLTAQRSAMNRDASAPASTETPTLTKAELAELLFDSVGLNKREAKD
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
MVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPGRNPKTGEAIPIAARRVVTFHASQ
HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
KLKALVENGVE
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA