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The map label for this gene is yraR [H]

Identifier: 115351180

GI number: 115351180

Start: 1236395

End: 1237024

Strand: Direct

Name: yraR [H]

Synonym: Bamb_1127

Alternate gene names: 115351180

Gene position: 1236395-1237024 (Clockwise)

Preceding gene: 115351179

Following gene: 115351181

Centisome position: 34.76

GC content: 71.43

Gene sequence:

>630_bases
ATGAAATTGCTGCTCGTCGGCGCGACCGGACTCGTTGGGCGCCGCGTCCTCGACATCGCGCTGGCCGACGCGCGGGTGGA
CCAGGTCGTCGTGCTCGCGCGCCGGCCGTTGTCGCCGCATCCGAAGATGCGCGCATTGACGGTCGACTTCGATCACCTGC
CCGAGGCGGCCGACTGGTGGCAGGCCGACGCGGTGATCTGCACGCTCGGCACCACGATGCGGGTCGCGGGCTCGCAGGCC
GCATTCCGCCGCGTCGATCACGACTATCCGCTCGCGGTCGCGCGTCTCGCGCACCGGTCCGGCACGTCGACCTACGTGCT
GAATTCCGCGCTCGGCGCGGACCCGGCGTCGCGCATCTTCTACAACCGCGTGAAGGGCGAAGTCGAGCGTGCGCTCGCTG
GCATCGGGTTCACGTCGCTCACCTGCGTGCGGCCGGGCCTGATCGGCGGCAGCCGCGACGAGTTCCGGTTCGGCGAGCGG
ATGATGGCGCTGGCGCTCGGTGCCGCCGGGCCGCTGTTGCCGCCGAAGTGGCGCGTGAATCCCGCGCCGCGCATCGCCCG
CGCGCTGCTCGATGCCGCGATCGATGCACGCCCGGGCGTGCATGTCATCGGATCGGAACGGCTCGCGTGA

Upstream 100 bases:

>100_bases
TTCGAACGGGCGGCTCCGGCGCGACGGCATGGTGATGTGCAGCGTCGCACGACTGCCGCTCACGGCCAGCTCTGCACCGG
CCATACACGGACAACTGCAC

Downstream 100 bases:

>100_bases
ACCGGGGCGGGCGACGTGCTGCCGACGCACGTGGCCGGCAAGGATGAACGAACCGACGTGCGTGCCGGCTATGTTTCGCC
GCCGCCGCTGTTGCCCAGCG

Product: nucleoside-diphosphate-sugar epimerase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MKLLLVGATGLVGRRVLDIALADARVDQVVVLARRPLSPHPKMRALTVDFDHLPEAADWWQADAVICTLGTTMRVAGSQA
AFRRVDHDYPLAVARLAHRSGTSTYVLNSALGADPASRIFYNRVKGEVERALAGIGFTSLTCVRPGLIGGSRDEFRFGER
MMALALGAAGPLLPPKWRVNPAPRIARALLDAAIDARPGVHVIGSERLA

Sequences:

>Translated_209_residues
MKLLLVGATGLVGRRVLDIALADARVDQVVVLARRPLSPHPKMRALTVDFDHLPEAADWWQADAVICTLGTTMRVAGSQA
AFRRVDHDYPLAVARLAHRSGTSTYVLNSALGADPASRIFYNRVKGEVERALAGIGFTSLTCVRPGLIGGSRDEFRFGER
MMALALGAAGPLLPPKWRVNPAPRIARALLDAAIDARPGVHVIGSERLA
>Mature_209_residues
MKLLLVGATGLVGRRVLDIALADARVDQVVVLARRPLSPHPKMRALTVDFDHLPEAADWWQADAVICTLGTTMRVAGSQA
AFRRVDHDYPLAVARLAHRSGTSTYVLNSALGADPASRIFYNRVKGEVERALAGIGFTSLTCVRPGLIGGSRDEFRFGER
MMALALGAAGPLLPPKWRVNPAPRIARALLDAAIDARPGVHVIGSERLA

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=203, Percent_Identity=33.0049261083744, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728168, Length=203, Percent_Identity=33.0049261083744, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728164, Length=203, Percent_Identity=33.0049261083744, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI148728166, Length=203, Percent_Identity=33.0049261083744, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI87082218, Length=215, Percent_Identity=34.8837209302326, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71983631, Length=208, Percent_Identity=36.0576923076923, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6320840, Length=178, Percent_Identity=32.0224719101124, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 22475; Mature: 22475

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLLVGATGLVGRRVLDIALADARVDQVVVLARRPLSPHPKMRALTVDFDHLPEAADWW
CEEEEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEECHHHCCCHHHHH
QADAVICTLGTTMRVAGSQAAFRRVDHDYPLAVARLAHRSGTSTYVLNSALGADPASRIF
CCCEEEEECCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
YNRVKGEVERALAGIGFTSLTCVRPGLIGGSRDEFRFGERMMALALGAAGPLLPPKWRVN
HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PAPRIARALLDAAIDARPGVHVIGSERLA
CHHHHHHHHHHHHHCCCCCEEEECCCCCC
>Mature Secondary Structure
MKLLLVGATGLVGRRVLDIALADARVDQVVVLARRPLSPHPKMRALTVDFDHLPEAADWW
CEEEEEECCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEECHHHCCCHHHHH
QADAVICTLGTTMRVAGSQAAFRRVDHDYPLAVARLAHRSGTSTYVLNSALGADPASRIF
CCCEEEEECCCEEEECCCHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHH
YNRVKGEVERALAGIGFTSLTCVRPGLIGGSRDEFRFGERMMALALGAAGPLLPPKWRVN
HHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
PAPRIARALLDAAIDARPGVHVIGSERLA
CHHHHHHHHHHHHHCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]