| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351094
Identifier: 115351094
GI number: 115351094
Start: 1129437
End: 1129907
Strand: Direct
Name: 115351094
Synonym: Bamb_1040
Alternate gene names: NA
Gene position: 1129437-1129907 (Clockwise)
Preceding gene: 115351093
Following gene: 115351096
Centisome position: 31.76
GC content: 69.64
Gene sequence:
>471_bases ATGATCGTCCGCTGGTTGCTGGCAGCCGTTCACCTGATGGCGTTTGGCGTCGCGTTCGCCGCGATCGCGGGGCGCAACCG CGCGCTGCGCCGGGTCATCGCGTCCGCGCAGGCCGCCGACCTGCCCGGCGTGTTCAAGGCCGATGCGGCCTGGGGATTGT CCGCGCTGGTGCTGATCGCGACGGGGCTCGCGCGCGCGTTCGGCGGCTTCGAGAAAGGCTCCGCGTATTACCTTCACGAG CCGCTCTTTCACCTCAAGATGACCGCGCTCGTGCTGATCCTGCTGCTCGAGGTCGTGCCGATGCTCGGGCTGATCCGCTG GCGCGTCGCCGCGCGGCGGCAGCAGATGCCGGATCTCGGCCGCGCACGGACCTATGTGCGGATCGGTCACTGGCAGGCCG TGCTCGTGATGGTGATCGTGTTGGCCGCGTCGGGGATGGCGCGGGGGATCTGGGCAGCCGGGCAGCTTTGA
Upstream 100 bases:
>100_bases GTGACCGAGGGCGACCGCGTCGCGGTGCTCGCGCTCGACGCGGCGCTCAAGCAGATCGTCTGACAAGGCCTGCGCGGCGC GCGGGCGACAAGGAGGCGCA
Downstream 100 bases:
>100_bases CCGGCGGATGGCGCCGGTTGCCGTTGCCGGGCCTGATCATTCTGGACCGACCGACGGGCCGAGCGACCGACAGACCGACC GGCGGGCCGTGGCCGCCCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 156
Protein sequence:
>156_residues MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL
Sequences:
>Translated_156_residues MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL >Mature_156_residues MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIATGLARAFGGFEKGSAYYLHE PLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLGRARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL
Specific function: Unknown
COG id: COG3556
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16927; Mature: 16927
Theoretical pI: Translated: 12.13; Mature: 12.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIA CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH TGLARAFGGFEKGSAYYLHEPLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLG HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH RARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC >Mature Secondary Structure MIVRWLLAAVHLMAFGVAFAAIAGRNRALRRVIASAQAADLPGVFKADAAWGLSALVLIA CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH TGLARAFGGFEKGSAYYLHEPLFHLKMTALVLILLLEVVPMLGLIRWRVAARRQQMPDLG HHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH RARTYVRIGHWQAVLVMVIVLAASGMARGIWAAGQL HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA