| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yhjG [H]
Identifier: 115350947
GI number: 115350947
Start: 982163
End: 983815
Strand: Direct
Name: yhjG [H]
Synonym: Bamb_0893
Alternate gene names: 115350947
Gene position: 982163-983815 (Clockwise)
Preceding gene: 115350945
Following gene: 115350952
Centisome position: 27.62
GC content: 71.45
Gene sequence:
>1653_bases ATGGCTGACACACTGCTCGACATCCCGCCCGTGCTGATCGTCGGCGCAGGCCCGACCGGCCTTGCCGCCGCGATGAGTCT CGCGCGTGCCCGCGTGCCGGTACGCATCATCGACCGGCTCACCACGCCCGCGCCGTATTCGCGTGCGATCGGCATCCAGG CGCGCACGCTCGAAATGCTGGAGCAGCATCGCGCGGTCGAACCGTTTCTCGTGCTGGGGCATCGCGCGCACGCGGCCGCG CTGCATGCGGGCGGCCGCGTGATCGCGCGGCTCGATTTCGATCCGCTGCAAACGCGCTATCCGTACCTGCTGTTTCTCGA CCAGAGCATCACCGAGCAGCTGCTCGCCGAGCATCTGGCCGGCCTCGGCGTGACGGTCGAACGCGGCGTCACGCTCACGG CGTGCGACGCGGGCGGCACGTCGCTCGACGTGACGATCCGCGGCGCCGACGGGCGTGAACGATCGTTCGCGCCGTCCTAC CTGATCGCCGCCGACGGCGCGCACAGCACGGTGCGCCATCTGCTTGGCCTCGGCTTCGCCGGGCAAGCGTTCGAGCAGAC CTTCCTGCTCGCCGATTTCTCGGCGATACCCGACTGGCCGGAAGAGGAGATCCACCTGTTCACGACGCCCGACGGCATCG CGGGGCTGTTCCCGATGGGCGGCGGCCGCTACCGGCTCGTCGCCGACCGGCCGCCGGGCGATGCATCTCCCGATGCGCCG CCACCGTCGCTCGCGCAATGCGAGGCGATCGTGCGCGCCCGTGTCGGCGCGTCGATCGCGCCGAGCGACCTCGCGTGGTC GTCGTATTTCCGGCTGCACAGCCGGATGGTCGCCCGGCTGCGTCACGGGCGCGTGTTCTTCGCGGGCGACGCCGCGCACG TTCACAGCCCGGCAGGCGCGCAGGGCATGAACACGGGCATGCAGGAAGCGTTCAATCTCGGCTGGAAGCTCGCGCGCGTG CTTGGCGGCGGCACGCCGGAGCGGCTGCTCGACACCTATCACGCGGAGCGCCATCCGATCGAGCGTGACGTATTGCGGCA GACCGGCCTCGTCACGCAGATCGTCGAAGCCGATCATGGCGCGATGAAGCTGCTGCGCGATCACGTCGTGCCGCTGCTGG CGACGTTCGGGCCCGTGCGCGACGCGGTGCGGCGCACCGTCAGCGAGCTTGGCGTGCAATACCGGAAAAGCCCGCTCACG CTCGAGCGCGTGCTCGACGGCGGGCCGCGCGCCGGCGAGCGTGCGCCGGACGCGCTCGTACATGTGGTCGACGGGCCGCT CGGGCGGGCACCCGGCACCGCGCGGCTATACGACCTGCACGACCCGGCGAGCTTCACGCTGCTGTTGCTCGAGGAGCCGG CAGGCGTCGAAGCGGGCGATGCGAACGACGTGCCGCCGATGCCCGCGGATGCGCGGGCGCTCGCGCAGGGGCTGGAGCGG ATCATGCCGGGCGCGGTGCGGATTTGGCGCGTCGCCGATGCCGAAAGCGACGGCGAGGACGGGCTGGCGCAGGCATACGG CCGCTCGCGGCCGTCGTTCTACCTGCTGCGGCCCGATGGTTACATCGCGGCGCGCGGCCGTACGGCCACCGACGCGAACG CGCTGCTGCGCCACTGCGAAAGCTGGTTCGCGGGCATGTCGCTGCCCGCGTAG
Upstream 100 bases:
>100_bases TCCCACACTGCGCGCGGGCGCCCCAGATTGGCCGGTCGGCATATGGCCCCGTCACGCGGAGCGGCGTAGACTTGCAGGAT CGCGTGTCATCGAGGCGCTC
Downstream 100 bases:
>100_bases CGGGGCGCTCAGGCGGAGACTGCGGCCGGCACGAGCGACGCGCGGTGCGCGGCGATCGCGGCGAGCACGATCGGCGCCGC GCGTTGGGCGGCTTCGCTCG
Product: FAD-binding monooxygenase
Products: H2O; 3-(2,3-dihydroxyphenyl)propionate; NAD [C]
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MADTLLDIPPVLIVGAGPTGLAAAMSLARARVPVRIIDRLTTPAPYSRAIGIQARTLEMLEQHRAVEPFLVLGHRAHAAA LHAGGRVIARLDFDPLQTRYPYLLFLDQSITEQLLAEHLAGLGVTVERGVTLTACDAGGTSLDVTIRGADGRERSFAPSY LIAADGAHSTVRHLLGLGFAGQAFEQTFLLADFSAIPDWPEEEIHLFTTPDGIAGLFPMGGGRYRLVADRPPGDASPDAP PPSLAQCEAIVRARVGASIAPSDLAWSSYFRLHSRMVARLRHGRVFFAGDAAHVHSPAGAQGMNTGMQEAFNLGWKLARV LGGGTPERLLDTYHAERHPIERDVLRQTGLVTQIVEADHGAMKLLRDHVVPLLATFGPVRDAVRRTVSELGVQYRKSPLT LERVLDGGPRAGERAPDALVHVVDGPLGRAPGTARLYDLHDPASFTLLLLEEPAGVEAGDANDVPPMPADARALAQGLER IMPGAVRIWRVADAESDGEDGLAQAYGRSRPSFYLLRPDGYIAARGRTATDANALLRHCESWFAGMSLPA
Sequences:
>Translated_550_residues MADTLLDIPPVLIVGAGPTGLAAAMSLARARVPVRIIDRLTTPAPYSRAIGIQARTLEMLEQHRAVEPFLVLGHRAHAAA LHAGGRVIARLDFDPLQTRYPYLLFLDQSITEQLLAEHLAGLGVTVERGVTLTACDAGGTSLDVTIRGADGRERSFAPSY LIAADGAHSTVRHLLGLGFAGQAFEQTFLLADFSAIPDWPEEEIHLFTTPDGIAGLFPMGGGRYRLVADRPPGDASPDAP PPSLAQCEAIVRARVGASIAPSDLAWSSYFRLHSRMVARLRHGRVFFAGDAAHVHSPAGAQGMNTGMQEAFNLGWKLARV LGGGTPERLLDTYHAERHPIERDVLRQTGLVTQIVEADHGAMKLLRDHVVPLLATFGPVRDAVRRTVSELGVQYRKSPLT LERVLDGGPRAGERAPDALVHVVDGPLGRAPGTARLYDLHDPASFTLLLLEEPAGVEAGDANDVPPMPADARALAQGLER IMPGAVRIWRVADAESDGEDGLAQAYGRSRPSFYLLRPDGYIAARGRTATDANALLRHCESWFAGMSLPA >Mature_549_residues ADTLLDIPPVLIVGAGPTGLAAAMSLARARVPVRIIDRLTTPAPYSRAIGIQARTLEMLEQHRAVEPFLVLGHRAHAAAL HAGGRVIARLDFDPLQTRYPYLLFLDQSITEQLLAEHLAGLGVTVERGVTLTACDAGGTSLDVTIRGADGRERSFAPSYL IAADGAHSTVRHLLGLGFAGQAFEQTFLLADFSAIPDWPEEEIHLFTTPDGIAGLFPMGGGRYRLVADRPPGDASPDAPP PSLAQCEAIVRARVGASIAPSDLAWSSYFRLHSRMVARLRHGRVFFAGDAAHVHSPAGAQGMNTGMQEAFNLGWKLARVL GGGTPERLLDTYHAERHPIERDVLRQTGLVTQIVEADHGAMKLLRDHVVPLLATFGPVRDAVRRTVSELGVQYRKSPLTL ERVLDGGPRAGERAPDALVHVVDGPLGRAPGTARLYDLHDPASFTLLLLEEPAGVEAGDANDVPPMPADARALAQGLERI MPGAVRIWRVADAESDGEDGLAQAYGRSRPSFYLLRPDGYIAARGRTATDANALLRHCESWFAGMSLPA
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pheA/tfdB FAD monooxygenase family [H]
Homologues:
Organism=Escherichia coli, GI1786543, Length=379, Percent_Identity=27.1767810026385, Blast_Score=108, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: 1.14.13.- [C]
Molecular weight: Translated: 59004; Mature: 58873
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTLLDIPPVLIVGAGPTGLAAAMSLARARVPVRIIDRLTTPAPYSRAIGIQARTLEML CCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHCCCHHHHHHHH EQHRAVEPFLVLGHRAHAAALHAGGRVIARLDFDPLQTRYPYLLFLDQSITEQLLAEHLA HHHCCCCCCEEECCCHHHHHHHCCCEEEEEECCCCHHCCCCEEEEECHHHHHHHHHHHHH GLGVTVERGVTLTACDAGGTSLDVTIRGADGRERSFAPSYLIAADGAHSTVRHLLGLGFA CCCEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC GQAFEQTFLLADFSAIPDWPEEEIHLFTTPDGIAGLFPMGGGRYRLVADRPPGDASPDAP CHHHHHHHHEEEHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC PPSLAQCEAIVRARVGASIAPSDLAWSSYFRLHSRMVARLRHGRVFFAGDAAHVHSPAGA CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCC QGMNTGMQEAFNLGWKLARVLGGGTPERLLDTYHAERHPIERDVLRQTGLVTQIVEADHG CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHCCHH AMKLLRDHVVPLLATFGPVRDAVRRTVSELGVQYRKSPLTLERVLDGGPRAGERAPDALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEE HVVDGPLGRAPGTARLYDLHDPASFTLLLLEEPAGVEAGDANDVPPMPADARALAQGLER EEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH IMPGAVRIWRVADAESDGEDGLAQAYGRSRPSFYLLRPDGYIAARGRTATDANALLRHCE HCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHH SWFAGMSLPA HHHCCCCCCC >Mature Secondary Structure ADTLLDIPPVLIVGAGPTGLAAAMSLARARVPVRIIDRLTTPAPYSRAIGIQARTLEML CCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHCCCHHHHHHHH EQHRAVEPFLVLGHRAHAAALHAGGRVIARLDFDPLQTRYPYLLFLDQSITEQLLAEHLA HHHCCCCCCEEECCCHHHHHHHCCCEEEEEECCCCHHCCCCEEEEECHHHHHHHHHHHHH GLGVTVERGVTLTACDAGGTSLDVTIRGADGRERSFAPSYLIAADGAHSTVRHLLGLGFA CCCEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC GQAFEQTFLLADFSAIPDWPEEEIHLFTTPDGIAGLFPMGGGRYRLVADRPPGDASPDAP CHHHHHHHHEEEHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC PPSLAQCEAIVRARVGASIAPSDLAWSSYFRLHSRMVARLRHGRVFFAGDAAHVHSPAGA CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCCCCCC QGMNTGMQEAFNLGWKLARVLGGGTPERLLDTYHAERHPIERDVLRQTGLVTQIVEADHG CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHCCHH AMKLLRDHVVPLLATFGPVRDAVRRTVSELGVQYRKSPLTLERVLDGGPRAGERAPDALV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCEE HVVDGPLGRAPGTARLYDLHDPASFTLLLLEEPAGVEAGDANDVPPMPADARALAQGLER EEECCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH IMPGAVRIWRVADAESDGEDGLAQAYGRSRPSFYLLRPDGYIAARGRTATDANALLRHCE HCCCCEEEEEEECCCCCCCCHHHHHHCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHH SWFAGMSLPA HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 3-(3-hydroxyphenyl)propionate; NADH; O2 [C]
Specific reaction: 3-(3-hydroxyphenyl)propionate + NADH + O2 = H2O + 3-(2,3-dihydroxyphenyl)propionate + NAD [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]