| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yvgK [H]
Identifier: 115350952
GI number: 115350952
Start: 989258
End: 990364
Strand: Direct
Name: yvgK [H]
Synonym: Bamb_0898
Alternate gene names: 115350952
Gene position: 989258-990364 (Clockwise)
Preceding gene: 115350947
Following gene: 115350953
Centisome position: 27.82
GC content: 70.73
Gene sequence:
>1107_bases TTGATTCGAATTGAATGCGACGCGTATCTGACCGTACGCGACACGGAGGGCCGCACCGCGAGCCTGTCGGACGTCGCGCC TTTGCTCGAGCTCGTGGCCGAGACGGGCAGCATCGCGCAGGCCGCGCAGGCGAAAGGGCTGTCGTATCGGCACGCGTGGG GGCTGCTGCGCGCGCTGGAGTCGTGCGTCGGCGGCGAGCTGATCGAAACCGCGCGCGGCAAGGGATCGACACTGTCGGAG CTGGGGCAGGCGGTCGTCGACGCCCAGCGCCTCGCGCGCAGCCGGCTCGACGGGAACCTGCGCACGCTGGCGGCCGAGGT GGCGAGCGACCTGAACCGGCGGCTCGCGCAACGCGACGGCGCCGTGCGCATCCATGCATCGCACGGCTACGCGGTCGCGG CGCTCGTTTCCGCGCTCGTCGATGCGCAGGCAGCCGTCGACATCAAGTATCGCGAGAGCGTCGAGGCCGTGCAGGCGCTT GCGCGCGGCGAATGCGAGCTGGCCGGGTTCCATCTGCCGCGCGGCGCGTTTCGCGAGCAGTGCGCGCAGATCTACCGGCC GTGGCTCGACGACACGCGCCACGTGCTGATTCATCTGACCCGTCGCCAGCAGGGGCTGTTCGTGCCGCGCGGCAACCCGA AGCAGATCCGCGGGCTCGCCGATCTCGCGCGCAACGACATCCGCTTCGTGAACCGGCAGCCGGGGTCCGGCACGCGCATG CTGCTCGATCTCGCGTTGCGCGCGATCGGCATCGATCCCGAGCGTATCGACGGCTATGCGTCGGCCGAACTCACGCACTC GGCGATCGCCGCGTTCGTCGCGAGCGGGATGGCCGATCTGGGCTTCGGCGTCGAGCCGGCCGCCCATCATTTCGGGCTCG ATTTCATCCCGGTCGTCGACGAGGACTACTACTTTGCGTGCGAACGCGCGCGGCTCGATTCGCATCCGCTCGCCGGCGTG CTGGCCTTGCTGCGCGATGCGCGCTTCGTCGAGCGCGTCGCGCATCTCGACGGCTACGACCCGGCCGCATGCGGGACGCT GACCGGCATCGCGGCCGGGCTCGCGGGCACGGCCGACGCGGGTGGGCCGGACGGCAACGCACGGTAA
Upstream 100 bases:
>100_bases TAGGAATGCATATAGTGCGCAGCAGGACTTCGTACTGATTGATTTTCCCCAACGATAAGCGGAAGATTTCGCAGTCGCAA TAGGAAATCGGAGTGCATAA
Downstream 100 bases:
>100_bases CGGCAAGCGTGCGAAGCGCGCTGCAACAGCGGGGGATTTGCGCTACGCTTGCCGCTTGATCAACGTTCCAACAAGCACGC CGTTCAGGCGTCATCCCGCC
Product: molybdate metabolism transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 368; Mature: 368
Protein sequence:
>368_residues MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR
Sequences:
>Translated_368_residues MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR >Mature_368_residues MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR
Specific function: Unknown
COG id: COG1910
COG function: function code P; Periplasmic molybdate-binding protein/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009061 - InterPro: IPR010093 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39404; Mature: 39404
Theoretical pI: Translated: 6.44; Mature: 6.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALE CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH SCVGGELIETARGKGSTLSELGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDG HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC AVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQALARGECELAGFHLPRGAFREQ CEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH CAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM HHHHHHHHHCCHHEEHHEEEHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVD HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEC EDYYFACERARLDSHPLAGVLALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADA CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC GGPDGNAR CCCCCCCC >Mature Secondary Structure MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALE CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH SCVGGELIETARGKGSTLSELGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDG HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC AVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQALARGECELAGFHLPRGAFREQ CEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH CAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM HHHHHHHHHCCHHEEHHEEEHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVD HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEC EDYYFACERARLDSHPLAGVLALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADA CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC GGPDGNAR CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]