Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is yvgK [H]

Identifier: 115350952

GI number: 115350952

Start: 989258

End: 990364

Strand: Direct

Name: yvgK [H]

Synonym: Bamb_0898

Alternate gene names: 115350952

Gene position: 989258-990364 (Clockwise)

Preceding gene: 115350947

Following gene: 115350953

Centisome position: 27.82

GC content: 70.73

Gene sequence:

>1107_bases
TTGATTCGAATTGAATGCGACGCGTATCTGACCGTACGCGACACGGAGGGCCGCACCGCGAGCCTGTCGGACGTCGCGCC
TTTGCTCGAGCTCGTGGCCGAGACGGGCAGCATCGCGCAGGCCGCGCAGGCGAAAGGGCTGTCGTATCGGCACGCGTGGG
GGCTGCTGCGCGCGCTGGAGTCGTGCGTCGGCGGCGAGCTGATCGAAACCGCGCGCGGCAAGGGATCGACACTGTCGGAG
CTGGGGCAGGCGGTCGTCGACGCCCAGCGCCTCGCGCGCAGCCGGCTCGACGGGAACCTGCGCACGCTGGCGGCCGAGGT
GGCGAGCGACCTGAACCGGCGGCTCGCGCAACGCGACGGCGCCGTGCGCATCCATGCATCGCACGGCTACGCGGTCGCGG
CGCTCGTTTCCGCGCTCGTCGATGCGCAGGCAGCCGTCGACATCAAGTATCGCGAGAGCGTCGAGGCCGTGCAGGCGCTT
GCGCGCGGCGAATGCGAGCTGGCCGGGTTCCATCTGCCGCGCGGCGCGTTTCGCGAGCAGTGCGCGCAGATCTACCGGCC
GTGGCTCGACGACACGCGCCACGTGCTGATTCATCTGACCCGTCGCCAGCAGGGGCTGTTCGTGCCGCGCGGCAACCCGA
AGCAGATCCGCGGGCTCGCCGATCTCGCGCGCAACGACATCCGCTTCGTGAACCGGCAGCCGGGGTCCGGCACGCGCATG
CTGCTCGATCTCGCGTTGCGCGCGATCGGCATCGATCCCGAGCGTATCGACGGCTATGCGTCGGCCGAACTCACGCACTC
GGCGATCGCCGCGTTCGTCGCGAGCGGGATGGCCGATCTGGGCTTCGGCGTCGAGCCGGCCGCCCATCATTTCGGGCTCG
ATTTCATCCCGGTCGTCGACGAGGACTACTACTTTGCGTGCGAACGCGCGCGGCTCGATTCGCATCCGCTCGCCGGCGTG
CTGGCCTTGCTGCGCGATGCGCGCTTCGTCGAGCGCGTCGCGCATCTCGACGGCTACGACCCGGCCGCATGCGGGACGCT
GACCGGCATCGCGGCCGGGCTCGCGGGCACGGCCGACGCGGGTGGGCCGGACGGCAACGCACGGTAA

Upstream 100 bases:

>100_bases
TAGGAATGCATATAGTGCGCAGCAGGACTTCGTACTGATTGATTTTCCCCAACGATAAGCGGAAGATTTCGCAGTCGCAA
TAGGAAATCGGAGTGCATAA

Downstream 100 bases:

>100_bases
CGGCAAGCGTGCGAAGCGCGCTGCAACAGCGGGGGATTTGCGCTACGCTTGCCGCTTGATCAACGTTCCAACAAGCACGC
CGTTCAGGCGTCATCCCGCC

Product: molybdate metabolism transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE
LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL
ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM
LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV
LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR

Sequences:

>Translated_368_residues
MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE
LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL
ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM
LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV
LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR
>Mature_368_residues
MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALESCVGGELIETARGKGSTLSE
LGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDGAVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQAL
ARGECELAGFHLPRGAFREQCAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM
LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVDEDYYFACERARLDSHPLAGV
LALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADAGGPDGNAR

Specific function: Unknown

COG id: COG1910

COG function: function code P; Periplasmic molybdate-binding protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR010093 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39404; Mature: 39404

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALE
CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
SCVGGELIETARGKGSTLSELGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDG
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
AVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQALARGECELAGFHLPRGAFREQ
CEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH
CAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM
HHHHHHHHHCCHHEEHHEEEHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVD
HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEC
EDYYFACERARLDSHPLAGVLALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADA
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
GGPDGNAR
CCCCCCCC
>Mature Secondary Structure
MIRIECDAYLTVRDTEGRTASLSDVAPLLELVAETGSIAQAAQAKGLSYRHAWGLLRALE
CEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
SCVGGELIETARGKGSTLSELGQAVVDAQRLARSRLDGNLRTLAAEVASDLNRRLAQRDG
HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
AVRIHASHGYAVAALVSALVDAQAAVDIKYRESVEAVQALARGECELAGFHLPRGAFREQ
CEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH
CAQIYRPWLDDTRHVLIHLTRRQQGLFVPRGNPKQIRGLADLARNDIRFVNRQPGSGTRM
HHHHHHHHHCCHHEEHHEEEHHCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LLDLALRAIGIDPERIDGYASAELTHSAIAAFVASGMADLGFGVEPAAHHFGLDFIPVVD
HHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEEEC
EDYYFACERARLDSHPLAGVLALLRDARFVERVAHLDGYDPAACGTLTGIAAGLAGTADA
CCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
GGPDGNAR
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]