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The map label for this gene is oxyR [H]

Identifier: 115350669

GI number: 115350669

Start: 689493

End: 690452

Strand: Direct

Name: oxyR [H]

Synonym: Bamb_0615

Alternate gene names: 115350669

Gene position: 689493-690452 (Clockwise)

Preceding gene: 115350668

Following gene: 115350670

Centisome position: 19.39

GC content: 65.42

Gene sequence:

>960_bases
ATGACCCTGACTGAACTGAAATACATCGTCGCGGTCGCGCGCGAGCGGCATTTCGGTCGCGCGGCCGAAGCCTGCTTCGT
GAGCCAGCCGACCCTCTCGGTGGCGATCAAGAAGCTGGAAGACGAGCTGAACGTGCAGATTTTCGAGCGCGGCGCGAGCG
AAGTGAGCGTGACCCCGATCGGCGACCAGATCGTCACGCAGGCGCAGCGCGTGCTCGAGCAGACCTTCGCGATCAAGGAG
ATCGCGAAGCAGGGCAAGGACCCGCTGGTCGGCCCGTTCCGTCTCGGCGTGATCTACACGATCGGGCCGTACCTGCTGCC
GACGCTCGTCAAGCAGATGATCCAGCGTGTGCCGCAGATGCCTTTGATGCTGCAGGAGAACTACACGCTGAAGCTGCTCG
AACTGCTGAAGCAGGGCGAGATCGACGCCGCGATCATGGCGCTGCCGTTTCCCGAAACCGGCCTGATGGTGCGGCCGCTG
TACGACGAGCCGTTCGTCGTCGCGCTGCCGGCCGGCCATCCGTGGGAGAAGCGCGCTGAGATCGACGCCGAGGATCTCAA
GCAGGAAACCATGCTGCTGCTCGGCAACGGGCACTGCTTCCGCGATCACGTGCTCGGCGTGTGCCCGGAACTGATGCGCT
TCTCGCAAACAGCCGACGGCATCCAGAAGACCTTCGAGGGCTCGTCGCTCGAAACGATTCGCCATATGGTCGCGAGCGGG
GTCGGCATCACGGTGCTGCCGCGGATGTCGGTCGCCGAGATCGGCCCGCGCGCGAACGGCCCCGACGCCGAACTGCTGTC
GTACGTGCCGTTCAACGAACCGGTGCCCGATCGGCGCGTCGTGCTGGTGTGGCGCAAGAGCTTCACGCGGATGCCGGCGA
TCGACGCGATCAGCGACGCGATCGCCGCGTGCGACCTGCCGGGCGTCGCAAAGCTCGACATGCCGGCGACGATGAACTGA

Upstream 100 bases:

>100_bases
GCCGCGCTTCGGCGCATTGCAATACTGAGAAACTTGGCGAATCGGTCCCAGTGGGTGTATAAATTAAACCTATCGCCTGT
ATATATCTGATTGACCCACA

Downstream 100 bases:

>100_bases
GCGCGCTGCGGCACGCATGACGGCATGATGAACGGGGCTTGCGACCCCGTTTATTTTTGCCTATCGCATAGATTATTTTA
ATTAAATTACAAAAGTCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPAGHPWEKRAEIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISDAIAACDLPGVAKLDMPATMN

Sequences:

>Translated_319_residues
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKE
IAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPL
YDEPFVVALPAGHPWEKRAEIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
VGITVLPRMSVAEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISDAIAACDLPGVAKLDMPATMN
>Mature_318_residues
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPIGDQIVTQAQRVLEQTFAIKEI
AKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQMPLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLY
DEPFVVALPAGHPWEKRAEIDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASGV
GITVLPRMSVAEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISDAIAACDLPGVAKLDMPATMN

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=303, Percent_Identity=39.6039603960396, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1787530, Length=261, Percent_Identity=27.9693486590038, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI157672245, Length=309, Percent_Identity=26.8608414239482, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788748, Length=311, Percent_Identity=26.6881028938907, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI2367136, Length=245, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=26.8456375838926, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788887, Length=292, Percent_Identity=27.3972602739726, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=26.0726072607261, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=189, Percent_Identity=27.5132275132275, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=176, Percent_Identity=33.5227272727273, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=256, Percent_Identity=24.21875, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=308, Percent_Identity=24.025974025974, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=259, Percent_Identity=26.2548262548263, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787806, Length=316, Percent_Identity=22.1518987341772, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=252, Percent_Identity=24.2063492063492, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786401, Length=247, Percent_Identity=26.3157894736842, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=261, Percent_Identity=24.904214559387, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1790208, Length=294, Percent_Identity=25.1700680272109, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35274; Mature: 35143

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CCHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPAGHPWEKRAE
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHCC
IDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISDA
CCEEEECCCHHHHCCCCCCCCCHHHHEECCCCCCCCCCEEEEEEEHHCCCCCCHHHHHHH
IAACDLPGVAKLDMPATMN
HHHCCCCCCEEECCCCCCC
>Mature Secondary Structure 
TLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIKKLEDELNVQIFERGASEVSVTPI
CHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHEECCCCEEEECCC
GDQIVTQAQRVLEQTFAIKEIAKQGKDPLVGPFRLGVIYTIGPYLLPTLVKQMIQRVPQM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLMLQENYTLKLLELLKQGEIDAAIMALPFPETGLMVRPLYDEPFVVALPAGHPWEKRAE
CEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHCC
IDAEDLKQETMLLLGNGHCFRDHVLGVCPELMRFSQTADGIQKTFEGSSLETIRHMVASG
CCHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
VGITVLPRMSVAEIGPRANGPDAELLSYVPFNEPVPDRRVVLVWRKSFTRMPAIDAISDA
CCEEEECCCHHHHCCCCCCCCCHHHHEECCCCCCCCCCEEEEEEEHHCCCCCCHHHHHHH
IAACDLPGVAKLDMPATMN
HHHCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA