Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is hitA [H]

Identifier: 115350408

GI number: 115350408

Start: 394746

End: 395111

Strand: Direct

Name: hitA [H]

Synonym: Bamb_0353

Alternate gene names: 115350408

Gene position: 394746-395111 (Clockwise)

Preceding gene: 115350407

Following gene: 115350409

Centisome position: 11.1

GC content: 68.85

Gene sequence:

>366_bases
ATGAGTCACGATCCGAATTGCCTGTTCTGCAAGATCGCGGCGGGCGAGATCCCGAGCGAGAAGGTGCACGAGGACGACGA
ATTCGTCGCGTTTCGCGACATCCGCCCGGCGGCCGAGACGCACGTGCTGGTGATTCCGCGCCGGCACCTGCCGACGCTGT
CGGCGGCGAGCGAAGCCGATGCGCCGATGCTCGGCCGGCTGATGCTGCTCGTCGCGCGTCTGGCCGACCAGCTCGGGGTG
GCCTACACGGGCGGCGAAACCGGTTTTCGCACGGTGATCAACACGGGCCCCGGCGGCGGGCAGGAGGTCTACCACCTGCA
CGCGCATATCCTGGCCGGTCCGCGCCCGTGGCTGCGGATGGGTTGA

Upstream 100 bases:

>100_bases
GTACCGTATCATCAAGGGTTGGCTGTACCTGAACGACAACAAGACGCTCGATCCGCAGGCCTGGTTCTGACCCGCGCGCG
GGGCGTTTCGCAGGAGCAAC

Downstream 100 bases:

>100_bases
CGTAGCGGGGCGTTTCCCCGCATCGATAGTCGAAGCCGGCGTGCCGCCGGCGATTTGCGCCGCCACGCGGCATGGTTGAG
GAGAGGTTTCATCATGGGTG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 120

Protein sequence:

>121_residues
MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGV
AYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG

Sequences:

>Translated_121_residues
MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGV
AYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG
>Mature_120_residues
SHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEADAPMLGRLMLLVARLADQLGVA
YTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRMG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=108, Percent_Identity=43.5185185185185, Blast_Score=97, Evalue=2e-21,
Organism=Homo sapiens, GI14211923, Length=107, Percent_Identity=39.2523364485981, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787346, Length=111, Percent_Identity=45.945945945946, Blast_Score=87, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17506713, Length=108, Percent_Identity=44.4444444444444, Blast_Score=102, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28574010, Length=108, Percent_Identity=49.0740740740741, Blast_Score=102, Evalue=5e-23,
Organism=Drosophila melanogaster, GI24581222, Length=108, Percent_Identity=49.0740740740741, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13132; Mature: 13001

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEAD
CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
APMLGRLMLLVARLADQLGVAYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRM
CCHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCC
G
C
>Mature Secondary Structure 
SHDPNCLFCKIAAGEIPSEKVHEDDEFVAFRDIRPAAETHVLVIPRRHLPTLSAASEAD
CCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
APMLGRLMLLVARLADQLGVAYTGGETGFRTVINTGPGGGQEVYHLHAHILAGPRPWLRM
CCHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA