| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350407
Identifier: 115350407
GI number: 115350407
Start: 394323
End: 394715
Strand: Direct
Name: 115350407
Synonym: Bamb_0352
Alternate gene names: NA
Gene position: 394323-394715 (Clockwise)
Preceding gene: 115350406
Following gene: 115350408
Centisome position: 11.09
GC content: 61.58
Gene sequence:
>393_bases ATGACCGATACGCCGAGCGAGTTTCCGACGCCGTCGCTGCCGGGCGCAGCGGACGCCGAGCGGTTGAAGGGCTTGCGCAC GCTGACGCACGTGCTGTACGGCCTCTACGCGATTCATTGGCTGACGGGCGGCGTGACCGGCATCATCGCGATCATCATCA ACTACGTGAAGCGCGACGACGTGGCCGGCACGCAGTACGCCGACCATTTCGAGTGGCAGATCCGCACGTTCTGGCGCGCG CTGATCGCCTACGTGATCGGCTTCGCGCTGATGTTCGTGGTGGTGGGATTCGTGATCATGTTTGTCACGTGGATCTGGAC GCTGTACCGTATCATCAAGGGTTGGCTGTACCTGAACGACAACAAGACGCTCGATCCGCAGGCCTGGTTCTGA
Upstream 100 bases:
>100_bases GCCGCGAGCGCGAAGAAAACGGCGGGTGACGGCTCACGGCCTGCCGCGCCGGCAACAGTGCGGTAAGCTGTAAGAATTGT CATCTGACGGGGGTAGCATC
Downstream 100 bases:
>100_bases CCCGCGCGCGGGGCGTTTCGCAGGAGCAACATGAGTCACGATCCGAATTGCCTGTTCTGCAAGATCGCGGCGGGCGAGAT CCCGAGCGAGAAGGTGCACG
Product: membrane protein
Products: NA
Alternate protein names: DNAJ Domain Protein; Chaperone Protein DNAJ
Number of amino acids: Translated: 130; Mature: 129
Protein sequence:
>130_residues MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRA LIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF
Sequences:
>Translated_130_residues MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRA LIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF >Mature_129_residues TDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDDVAGTQYADHFEWQIRTFWRAL IAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLNDNKTLDPQAWF
Specific function: Unknown
COG id: COG3671
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14975; Mature: 14843
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDD CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VAGTQYADHFEWQIRTFWRALIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC NKTLDPQAWF CCCCCCCCCC >Mature Secondary Structure TDTPSEFPTPSLPGAADAERLKGLRTLTHVLYGLYAIHWLTGGVTGIIAIIINYVKRDD CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VAGTQYADHFEWQIRTFWRALIAYVIGFALMFVVVGFVIMFVTWIWTLYRIIKGWLYLND CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC NKTLDPQAWF CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA