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The map label for this gene is yedY [H]

Identifier: 115350357

GI number: 115350357

Start: 342707

End: 343741

Strand: Direct

Name: yedY [H]

Synonym: Bamb_0302

Alternate gene names: 115350357

Gene position: 342707-343741 (Clockwise)

Preceding gene: 115350356

Following gene: 115350358

Centisome position: 9.64

GC content: 64.35

Gene sequence:

>1035_bases
ATGAAGCGTGCGCGCGGCGCATGCAGGAGGAGCAGCACGATGTGGATCAAAACCCCTTTGCGCACCGTACTGACCGGCGG
TGATATCGCGCAGAGCCAGATTACGCCGCGCGCGGTGTTCGAGAACCGGCGGCGCGTATTGCAGGCAGCCGGCCTGGCGG
CGGCGGGCGGATTGCTGGGCGGCAGCGGCGCGGCGTTCGCCGCGTATGCGTCGCCCGACGCGCGGGCCGCGAAGCTTGCG
GCGCAAACCAACCCGAAGTTCGTCGCGGCCGACAAGGTGACGCCGTTCAAGGACATCACGTCCTACAACAACTACTACGA
ATTCGGCACCGACAAGGGCGACCCGGCGCAGAACGCGGGCACGTTGCGGCCGCGCCCGTGGCGCGTGAGTGTCGAGGGCG
AGGTGCTGCATCCGAAGGTATTCGATCTCGACGAACTGCTGAAGCTCGCGCCGCTCGAGGAGCGCGTGTATCGGCTGCGC
TGCGTCGAGGGCTGGTCGATGGTGATTCCATGGATCGGCGTGCCGCTGTCCGAGCTGATCAAGCGCGTGCAGCCGACCGG
CAACGCGAAATACGTGCAGTTCATCACGCTGGCCGATCCGTCGCAGATGCCGGGGTTGTCGACGCCGGTGCTCGACTGGC
CGTACTCGGAAGGGCTGCGGATGGACGAGGCGATGAATCCGCTGACGCTGCTGACGATGGGCGTCTATGGTCAGGTGCTG
CCGAACCAGAACGGCGCGCCGGTGCGCATCGTCGTGCCGTGGAAGTACGGCTTCAAGAGCGCGAAGTCGCTCGTGAAGAT
CCGCTTCGTCGACAAGCAGCCGAAGACGAGCTGGAACACGTATGCGTCGAACGAATACGGTTTCTATTCGAACGTGAATC
CGAACGTCGACCACCCGCGCTGGAGCCAGGCGACCGAGCGCCGGATCGGCGAGGACGGCTTCTTCACGCCGAAGCGCAAG
ACGCTGATGTTCAACGGCTACGGCGATCTCGTCGCGTCGATGTATCAGGGCATGGATCTGAAAAAGAATTTCTGA

Upstream 100 bases:

>100_bases
ACAAAAGACCGCCGGCGCACTGCGTGCCCGGCGGTTTTGTTTTGTAACGGGCGGGTGGCCCGGGCGTCGAACGGCCCATG
ATCGGCCGGGTCGAACGCTG

Downstream 100 bases:

>100_bases
GCGCGACGGTGAGAAACGACATGCCTCCTTCGACACTGGAGCCCGTGCGCACGTCCGGCACGCGCACGGCAGCCGCGGGT
AGCGCCCGGGCCGGCGCCGT

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKRARGACRRSSTMWIKTPLRTVLTGGDIAQSQITPRAVFENRRRVLQAAGLAAAGGLLGGSGAAFAAYASPDARAAKLA
AQTNPKFVAADKVTPFKDITSYNNYYEFGTDKGDPAQNAGTLRPRPWRVSVEGEVLHPKVFDLDELLKLAPLEERVYRLR
CVEGWSMVIPWIGVPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVL
PNQNGAPVRIVVPWKYGFKSAKSLVKIRFVDKQPKTSWNTYASNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRK
TLMFNGYGDLVASMYQGMDLKKNF

Sequences:

>Translated_344_residues
MKRARGACRRSSTMWIKTPLRTVLTGGDIAQSQITPRAVFENRRRVLQAAGLAAAGGLLGGSGAAFAAYASPDARAAKLA
AQTNPKFVAADKVTPFKDITSYNNYYEFGTDKGDPAQNAGTLRPRPWRVSVEGEVLHPKVFDLDELLKLAPLEERVYRLR
CVEGWSMVIPWIGVPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVL
PNQNGAPVRIVVPWKYGFKSAKSLVKIRFVDKQPKTSWNTYASNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRK
TLMFNGYGDLVASMYQGMDLKKNF
>Mature_344_residues
MKRARGACRRSSTMWIKTPLRTVLTGGDIAQSQITPRAVFENRRRVLQAAGLAAAGGLLGGSGAAFAAYASPDARAAKLA
AQTNPKFVAADKVTPFKDITSYNNYYEFGTDKGDPAQNAGTLRPRPWRVSVEGEVLHPKVFDLDELLKLAPLEERVYRLR
CVEGWSMVIPWIGVPLSELIKRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVL
PNQNGAPVRIVVPWKYGFKSAKSLVKIRFVDKQPKTSWNTYASNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRK
TLMFNGYGDLVASMYQGMDLKKNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=328, Percent_Identity=51.219512195122, Blast_Score=332, Evalue=3e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 38306; Mature: 38306

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRARGACRRSSTMWIKTPLRTVLTGGDIAQSQITPRAVFENRRRVLQAAGLAAAGGLLG
CCCCCCHHHCCCEEEEECCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCC
GSGAAFAAYASPDARAAKLAAQTNPKFVAADKVTPFKDITSYNNYYEFGTDKGDPAQNAG
CCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEECCCCCCCCCCCCC
TLRPRPWRVSVEGEVLHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGVPLSELI
CCCCCCEEEEECCCEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
KRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVL
HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHEEC
PNQNGAPVRIVVPWKYGFKSAKSLVKIRFVDKQPKTSWNTYASNEYGFYSNVNPNVDHPR
CCCCCCCEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC
WSQATERRIGEDGFFTPKRKTLMFNGYGDLVASMYQGMDLKKNF
CHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKRARGACRRSSTMWIKTPLRTVLTGGDIAQSQITPRAVFENRRRVLQAAGLAAAGGLLG
CCCCCCHHHCCCEEEEECCHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHCHHHHCCCCC
GSGAAFAAYASPDARAAKLAAQTNPKFVAADKVTPFKDITSYNNYYEFGTDKGDPAQNAG
CCCCEEEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCEEECCCCCCCCCCCCC
TLRPRPWRVSVEGEVLHPKVFDLDELLKLAPLEERVYRLRCVEGWSMVIPWIGVPLSELI
CCCCCCEEEEECCCEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHH
KRVQPTGNAKYVQFITLADPSQMPGLSTPVLDWPYSEGLRMDEAMNPLTLLTMGVYGQVL
HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHEEC
PNQNGAPVRIVVPWKYGFKSAKSLVKIRFVDKQPKTSWNTYASNEYGFYSNVNPNVDHPR
CCCCCCCEEEEEECCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCC
WSQATERRIGEDGFFTPKRKTLMFNGYGDLVASMYQGMDLKKNF
CHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA