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The map label for this gene is ccsA [H]

Identifier: 115350356

GI number: 115350356

Start: 341397

End: 342587

Strand: Direct

Name: ccsA [H]

Synonym: Bamb_0301

Alternate gene names: 115350356

Gene position: 341397-342587 (Clockwise)

Preceding gene: 115350355

Following gene: 115350357

Centisome position: 9.6

GC content: 64.15

Gene sequence:

>1191_bases
ATGGATCTCACGCAAGTTTCCTCCTCCCCTTCGGGGCCGGCAAAGGCTTCGAATCCGGCGCCGTTGTTCGACGACCGTCC
GTTCCTCGCGCGCCTGTCGGTCATCGACTGGTTGTTCGCGCTGGCACTCGTGGTCGGCGCGGGCTATGCGTTCGTGCACT
ACAACGAACACATGAATTACTACGACAAGGCGGTGATGATCGGCACGGTGCCGGCGCTTGTCGTGCTCGGCTGGCGCTGG
AAGCCCGCCCGGCTGATGATGGCGTCGATCGCGGTGCTGTCGCTGCTGTCGATCCAGATCTACCAGGGCGATCTCGCGCG
CGCCGATTCGGCGTTCTTCCTCAAGTACTTCCTGTCGAGCCAGTCCGCGATCCTGTGGATGAGCGCGCTGTTCGTGCTCG
CGACGATCTTCTACTGGATCGGCTTGCTCGCACGCTCGGAGTCGGGCTCCGCGATCGGCCAGAAGCTCACGTGGGTCGCC
GTGCTGATGGGCTTCACCGGTCTGATGGTGCGCTGGTACGAGTCCTACCTGATCGGTGCCGACGTCGGGCATATCCCCGT
ATCGAACCTGTATGAAGTGTTCGTGCTGTTCAGCCTGATCACCGCGCTGCTTTATCTGTATTACGAAGGCCACTACGGCA
CGCGTGCACTCGGCGCATTCGTGCTGCTGGTCATCAGTGCGGCTGTCGGCTTCCTGATGTGGTACTCGGTCGCGCGCGAT
GCGCAGCAGATCCAGCCGCTCGTGCCGGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCGGCGAACTTCATCGGCTA
CGGCAGCTTCGCGCTGTCGGCGATGGTGTCGGTCGCGTACCTGATGAAGGAGCGCGGCGTGCTCGCCGATCGCCTGCCGA
CGCTCGAGGTGCTCGACGACGTGATGTACAAGTCGATCGCGGTCGGCTTCGCGTTCTTCACGATCGCGACGATCCTCGGC
GCGCTCTGGGCCGCCGAAGCATGGGGCGGCTACTGGAGCTGGGACCCGAAGGAGACCTGGGCGCTGATCGTGTGGCTCAA
CTACGCGGCCTGGCTGCACATGCGCCTGATGAAGGGCCTGCGCGGCGCGGTCGCCGCCTGGTGGGCGCTGACGGGCCTGC
TCGTGACGACGTTCGCGTTCCTCGGCGTCAACATGTTCCTGTCCGGGCTGCACAGCTACGGCAAGCTGTAA

Upstream 100 bases:

>100_bases
GCACCGCGCGACGCCGCGCCCACAGGCGCGGCAGCGACTGCCCGTCCGCCCGCCGGCGGCGGTTCCGATTCCGATTCCGA
GAACTCCACCCGGTAACATC

Downstream 100 bases:

>100_bases
GATTTCCGACGCTGGTCCGACAAAAGACCGCCGGCGCACTGCGTGCCCGGCGGTTTTGTTTTGTAACGGGCGGGTGGCCC
GGGCGTCGAACGGCCCATGA

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDLTQVSSSPSGPAKASNPAPLFDDRPFLARLSVIDWLFALALVVGAGYAFVHYNEHMNYYDKAVMIGTVPALVVLGWRW
KPARLMMASIAVLSLLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGAVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Sequences:

>Translated_396_residues
MDLTQVSSSPSGPAKASNPAPLFDDRPFLARLSVIDWLFALALVVGAGYAFVHYNEHMNYYDKAVMIGTVPALVVLGWRW
KPARLMMASIAVLSLLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGAVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
>Mature_396_residues
MDLTQVSSSPSGPAKASNPAPLFDDRPFLARLSVIDWLFALALVVGAGYAFVHYNEHMNYYDKAVMIGTVPALVVLGWRW
KPARLMMASIAVLSLLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGAVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44041; Mature: 44041

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTQVSSSPSGPAKASNPAPLFDDRPFLARLSVIDWLFALALVVGAGYAFVHYNEHMNY
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
YDKAVMIGTVPALVVLGWRWKPARLMMASIAVLSLLSIQIYQGDLARADSAFFLKYFLSS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCC
QSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDD
HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHH
RGAVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTQVSSSPSGPAKASNPAPLFDDRPFLARLSVIDWLFALALVVGAGYAFVHYNEHMNY
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCH
YDKAVMIGTVPALVVLGWRWKPARLMMASIAVLSLLSIQIYQGDLARADSAFFLKYFLSS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCC
QSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDD
HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHH
RGAVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA