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The map label for this gene is ocd2 [H]

Identifier: 116249413

GI number: 116249413

Start: 818002

End: 819006

Strand: Direct

Name: ocd2 [H]

Synonym: pRL120751

Alternate gene names: 116249413

Gene position: 818002-819006 (Clockwise)

Preceding gene: 116249412

Following gene: 116249414

Centisome position: 94.02

GC content: 59.8

Gene sequence:

>1005_bases
ATGCAGGAAATCTGGATCGATTATCTCAACGCCCTCGATGCCAAGGCGCTGGCGCTGACGAATGACGAGATTCTCGATGC
TGTGTCGAAAGCGCTGGATGCGCAGGGCAGGGGCGAAACCGTCATCGAGCCGCGTGTTCATCTTGTGCCGGAGAGCTCCG
ACAAAGGCCATTTCAACGTGCTTCGCGGCTATGTCAAAGCGCTGAACTATGCCGGCGTCAAAGTCGTCGGCGATTTCGTC
GACAACTATAAGGTCGATCTGCCCTCGGAGCTTGCGGTCCTCAACCTGTTCGACCCGAACACCGGCGTGCCGAAGGCCAT
CATCGACGCAACTGCTATCACCGACATGCGGACCGGCGCCGTGACCGCCCTTGGCGCAAAATATCTCGCCCGCAAGAACA
GCAAGATTCTCGGCCATATCGGTGCCCGCGGAACCTCCTACTGGAACGTTCGCCTTCTCGATCATCTCTTCGACTTCGAT
GAAATCCGCGTGCATTCGCGCCGCCCGGAAAGTCGCGATGCCTTCGCAAAGCGTCTTGAGGCGGATCTCGGCAAGAAGAT
CATCGTCACCGACAATTGGGAGGATTGCCTCAAGGGTGCTGATATCATGGTCGAGGCCAGCCGCCTGCCGGAACCGGCGC
CGCTGTTCAAGACGGAATGGGTGAAGAAGGGAGCCTTCGTCGTGCCCTATGGCACGATGAGCGCGCTTGAATTCGATCTC
ACCGATATCATGGACAAGGTCGTCGTCGACGATTGGGGACAATGCGGCCCCGGCAAGCCGTTTGGAGCGCTTCGCCGTCA
CGTCGACGAGGGCAAGGTGACGGCCGAGAACCTGCATGCCGAAATCGGCCAGATCGTCTGCGGCATGAAACCCGGCCGCG
AGAGCGACGAGGAGACGATCCTGTTCTGGCATCGCGGCCTCAGCACGACCGACGTGGCGCTCGGCGCCGCCATGGTCGAT
AAGGCAAGAGAGATGAATATCGGCCAGCGCCTGCGGTTCGCATAA

Upstream 100 bases:

>100_bases
GGGTATCGATCCGGCCGCGACCTGGCGTGGCGATCCTTTTAGGTGTCTGTTCGAAAATCCGTCCGTTCAGCAGCCGGACA
GGAATGTGGAGAAGCGGGAA

Downstream 100 bases:

>100_bases
TTGCCATGGTGATGTCCAAGCCAATCGCCTGTTCGAGAATGTATAATCTCAGCCCGCACATTCGTGGCCTGTGGGACGCG
CTGTTTGCGCTGGTCAGCGT

Product: putative ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD 2 [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MQEIWIDYLNALDAKALALTNDEILDAVSKALDAQGRGETVIEPRVHLVPESSDKGHFNVLRGYVKALNYAGVKVVGDFV
DNYKVDLPSELAVLNLFDPNTGVPKAIIDATAITDMRTGAVTALGAKYLARKNSKILGHIGARGTSYWNVRLLDHLFDFD
EIRVHSRRPESRDAFAKRLEADLGKKIIVTDNWEDCLKGADIMVEASRLPEPAPLFKTEWVKKGAFVVPYGTMSALEFDL
TDIMDKVVVDDWGQCGPGKPFGALRRHVDEGKVTAENLHAEIGQIVCGMKPGRESDEETILFWHRGLSTTDVALGAAMVD
KAREMNIGQRLRFA

Sequences:

>Translated_334_residues
MQEIWIDYLNALDAKALALTNDEILDAVSKALDAQGRGETVIEPRVHLVPESSDKGHFNVLRGYVKALNYAGVKVVGDFV
DNYKVDLPSELAVLNLFDPNTGVPKAIIDATAITDMRTGAVTALGAKYLARKNSKILGHIGARGTSYWNVRLLDHLFDFD
EIRVHSRRPESRDAFAKRLEADLGKKIIVTDNWEDCLKGADIMVEASRLPEPAPLFKTEWVKKGAFVVPYGTMSALEFDL
TDIMDKVVVDDWGQCGPGKPFGALRRHVDEGKVTAENLHAEIGQIVCGMKPGRESDEETILFWHRGLSTTDVALGAAMVD
KAREMNIGQRLRFA
>Mature_334_residues
MQEIWIDYLNALDAKALALTNDEILDAVSKALDAQGRGETVIEPRVHLVPESSDKGHFNVLRGYVKALNYAGVKVVGDFV
DNYKVDLPSELAVLNLFDPNTGVPKAIIDATAITDMRTGAVTALGAKYLARKNSKILGHIGARGTSYWNVRLLDHLFDFD
EIRVHSRRPESRDAFAKRLEADLGKKIIVTDNWEDCLKGADIMVEASRLPEPAPLFKTEWVKKGAFVVPYGTMSALEFDL
TDIMDKVVVDDWGQCGPGKPFGALRRHVDEGKVTAENLHAEIGQIVCGMKPGRESDEETILFWHRGLSTTDVALGAAMVD
KAREMNIGQRLRFA

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=283, Percent_Identity=26.1484098939929, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI62241008, Length=281, Percent_Identity=25.9786476868327, Blast_Score=97, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 36918; Mature: 36918

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIWIDYLNALDAKALALTNDEILDAVSKALDAQGRGETVIEPRVHLVPESSDKGHFNV
CCHHHHHHHHHCCCHHEEECCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCHHHH
LRGYVKALNYAGVKVVGDFVDNYKVDLPSELAVLNLFDPNTGVPKAIIDATAITDMRTGA
HHHHHHHHHCCCHHHEEHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCH
VTALGAKYLARKNSKILGHIGARGTSYWNVRLLDHLFDFDEIRVHSRRPESRDAFAKRLE
HHHHHHHHHHHCCCCEEEECCCCCCCEEEHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHH
ADLGKKIIVTDNWEDCLKGADIMVEASRLPEPAPLFKTEWVKKGAFVVPYGTMSALEFDL
HHHCCEEEEECCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHH
TDIMDKVVVDDWGQCGPGKPFGALRRHVDEGKVTAENLHAEIGQIVCGMKPGRESDEETI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
LFWHRGLSTTDVALGAAMVDKAREMNIGQRLRFA
EEEECCCCHHHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MQEIWIDYLNALDAKALALTNDEILDAVSKALDAQGRGETVIEPRVHLVPESSDKGHFNV
CCHHHHHHHHHCCCHHEEECCHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCHHHH
LRGYVKALNYAGVKVVGDFVDNYKVDLPSELAVLNLFDPNTGVPKAIIDATAITDMRTGA
HHHHHHHHHCCCHHHEEHHHHCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCH
VTALGAKYLARKNSKILGHIGARGTSYWNVRLLDHLFDFDEIRVHSRRPESRDAFAKRLE
HHHHHHHHHHHCCCCEEEECCCCCCCEEEHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHH
ADLGKKIIVTDNWEDCLKGADIMVEASRLPEPAPLFKTEWVKKGAFVVPYGTMSALEFDL
HHHCCEEEEECCHHHHHCCCCEEEECCCCCCCCCCHHHHHHHCCCEEEECCCHHHHHHHH
TDIMDKVVVDDWGQCGPGKPFGALRRHVDEGKVTAENLHAEIGQIVCGMKPGRESDEETI
HHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEE
LFWHRGLSTTDVALGAAMVDKAREMNIGQRLRFA
EEEECCCCHHHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]