| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
Click here to switch to the map view.
The map label for this gene is 116249390
Identifier: 116249390
GI number: 116249390
Start: 794881
End: 795165
Strand: Reverse
Name: 116249390
Synonym: pRL120728
Alternate gene names: NA
Gene position: 795165-794881 (Counterclockwise)
Preceding gene: 116249393
Following gene: 116249387
Centisome position: 91.4
GC content: 56.14
Gene sequence:
>285_bases ATGCAATGTCCGACGGATCCCGTGTGCGAGAGCGGCCTGCGGCCAGCATTCGACCGTGCGCGCCAACGATCGAACGGCTT CGTCCACATTGAAAACCACGTCCCCGAGCCGCTCGATCTCATGATCAAGCTCGTAGACCTGGACTTCGTCGAGGTCGTCA TTCTGAAGCCGTCGCCTCATTGCATCGATAAGGCGCTCAGTTCGCCCAACGATATCAAGAGCGCTTCGTATGATGATGTC GAACATGCCTATCCCCTCTCTTCGATAATGAAGGGTCGGCCATAA
Upstream 100 bases:
>100_bases GCGACGGTCGCGTGACATCGGCGTGACATGCAGAATCGACACTGCCAACTCAGGGCGGAATTGGTGACGCGTCAGTTGCC AAAGCGGCCATCAACCGTCA
Downstream 100 bases:
>100_bases TCGTGATGCTGACAATCCTGAAATCTTGTCAGAGGCGCTCGCGGATCGTGTCGTAGAGATCCCTTAACTCACGCAGTGCG GGTTGATGCCGATGGCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 94; Mature: 94
Protein sequence:
>94_residues MQCPTDPVCESGLRPAFDRARQRSNGFVHIENHVPEPLDLMIKLVDLDFVEVVILKPSPHCIDKALSSPNDIKSASYDDV EHAYPLSSIMKGRP
Sequences:
>Translated_94_residues MQCPTDPVCESGLRPAFDRARQRSNGFVHIENHVPEPLDLMIKLVDLDFVEVVILKPSPHCIDKALSSPNDIKSASYDDV EHAYPLSSIMKGRP >Mature_94_residues MQCPTDPVCESGLRPAFDRARQRSNGFVHIENHVPEPLDLMIKLVDLDFVEVVILKPSPHCIDKALSSPNDIKSASYDDV EHAYPLSSIMKGRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10499; Mature: 10499
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQCPTDPVCESGLRPAFDRARQRSNGFVHIENHVPEPLDLMIKLVDLDFVEVVILKPSPH CCCCCCHHHHCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCH CIDKALSSPNDIKSASYDDVEHAYPLSSIMKGRP HHHHHHCCCCCCCCCCCCCCHHHCCHHHHHCCCC >Mature Secondary Structure MQCPTDPVCESGLRPAFDRARQRSNGFVHIENHVPEPLDLMIKLVDLDFVEVVILKPSPH CCCCCCHHHHCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCH CIDKALSSPNDIKSASYDDVEHAYPLSSIMKGRP HHHHHHCCCCCCCCCCCCCCHHHCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA