Click here to switch to the map view.

The map label for this gene is 116249387

Identifier: 116249387

GI number: 116249387

Start: 793364

End: 793792

Strand: Reverse

Name: 116249387

Synonym: pRL120725

Alternate gene names: NA

Gene position: 793792-793364 (Counterclockwise)

Preceding gene: 116249390

Following gene: 116249383

Centisome position: 91.24

GC content: 57.81

Gene sequence:

>429_bases
ATGCGCGGATATGATGAACGGATGAACCGTACCAACGCGGCGTGTGAACAAAAGGAAGTTCGGGCGATGCTAGCAAGACC
AGCCGGATATGCCGGGGCCGCAATCGCTGCTCTGTGGTCGGCCCGCCAGGTGGGCCGACTTTATTCCTCCACCGAACCGT
TCGGTCCTGAGCTCATGAATGTTGCAAGAAATCTCGGCATTTTCATTCTGCCGGCGCTCGTTCTTCTCCTGGCGGGGCCT
TTCAGGATGTGGTTCGACAAATTTGCGCCGCTGTACCCCTTAGTGCTCGGAGCCGGTGTCCTCAACATCTATATGCAAGA
CGATGCGCTGGCTGCCGGTCTGCCGATGATCGTGCTCGTCTACCCCTTCCTGGTGGTCTTTGCGCTCGCCTACTTGTTGC
GCGGGCGAGTGTCGGAAATGCGCAATTGA

Upstream 100 bases:

>100_bases
AACGAGGCGCCATCGCCTCGTTCCGTCGAAGCGCATGCAGTCGCCTATCCTCTCACGTTGACGTTGAATTTTTCGGAGAC
CAACTGGTAAATCCGAGAAT

Downstream 100 bases:

>100_bases
ATCCTGCGGCGCCCCGCGGACGAGTGACTCCCATCTCACCTCTAGCCACTCCAGAAGAAGTGCGAAGCGGTTTTCCCGCG
AAAGGCTCTAAAACTCGTCG

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MRGYDERMNRTNAACEQKEVRAMLARPAGYAGAAIAALWSARQVGRLYSSTEPFGPELMNVARNLGIFILPALVLLLAGP
FRMWFDKFAPLYPLVLGAGVLNIYMQDDALAAGLPMIVLVYPFLVVFALAYLLRGRVSEMRN

Sequences:

>Translated_142_residues
MRGYDERMNRTNAACEQKEVRAMLARPAGYAGAAIAALWSARQVGRLYSSTEPFGPELMNVARNLGIFILPALVLLLAGP
FRMWFDKFAPLYPLVLGAGVLNIYMQDDALAAGLPMIVLVYPFLVVFALAYLLRGRVSEMRN
>Mature_142_residues
MRGYDERMNRTNAACEQKEVRAMLARPAGYAGAAIAALWSARQVGRLYSSTEPFGPELMNVARNLGIFILPALVLLLAGP
FRMWFDKFAPLYPLVLGAGVLNIYMQDDALAAGLPMIVLVYPFLVVFALAYLLRGRVSEMRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15728; Mature: 15728

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGYDERMNRTNAACEQKEVRAMLARPAGYAGAAIAALWSARQVGRLYSSTEPFGPELMN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VARNLGIFILPALVLLLAGPFRMWFDKFAPLYPLVLGAGVLNIYMQDDALAAGLPMIVLV
HHHHCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YPFLVVFALAYLLRGRVSEMRN
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRGYDERMNRTNAACEQKEVRAMLARPAGYAGAAIAALWSARQVGRLYSSTEPFGPELMN
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
VARNLGIFILPALVLLLAGPFRMWFDKFAPLYPLVLGAGVLNIYMQDDALAAGLPMIVLV
HHHHCCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
YPFLVVFALAYLLRGRVSEMRN
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA