| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is impD
Identifier: 116249137
GI number: 116249137
Start: 510267
End: 511655
Strand: Reverse
Name: impD
Synonym: pRL120472
Alternate gene names: NA
Gene position: 511655-510267 (Counterclockwise)
Preceding gene: 116249138
Following gene: 116249136
Centisome position: 58.81
GC content: 62.85
Gene sequence:
>1389_bases ATGGGTTCCAGCACTGAATGGCGGCGCCGGGCGGATCAGCTGATTACGCTGATCGACGAAGCGCTGAACAAGCAAGTCAA TGCCATCCTCCACCATCCCGATTTTCAGGCGATGGAGGCGAGATGGCGTGGCCTCGCCATGCTCGTGCGCGAGGCAAGCC GCAGCGGCGAAGTGAAAGTCAAGCTTCTCGGCGTCAGCTGGAGCGAGCTCACGCGGAGCATGGAGCGTGCCAGCGACTTC GACCAAAGCCACCTCTTCGAACTCATCTATAGCCGCGAGTTCGGCATGCCGGGCGGCGAACCCCTCGGTCTGCTGGTCGG CGATTATTATCTTTCTCCGGCCGATCCGGCCGGCGGCGATCCGGTCAGCACGCTGTCGCAGATCGGCATGGTGGCGGCCG CCGCCTTCTGCCCCTTCGTCGCGGGTGCTGCGCCGCTGGCGATCGGGCTTGAAGACTTTCACGAGCTGAACCGGGTCAAC GACTTTTCCTGGCTTGCCAATGAGACCGCCCGCATCCGCTGGAATGGTCTCCGCGCACGTGAGGATTCGCGTTTCCTCGG ACTTGTCGCGCCGCGCATCCTGATGCGCTCGCCGCTGACGCCTCATTCGCGCAATCGCAACGACGGCTTTCCCTTCCGCG AAAGCATTGCTGGCGACGGTAGTTCGCTTCTCTGGGGCAACGCCGCTTTCGCCTTTGCGACCGTCGTCATTCGCAATTTC ATCGATTCCGGCTGGTTCGCGGATATCCGCGGCGTCACGCAGGATGCCGTCGACGGTGGCCTGCTGAGTACAGCGGAATT GCCGCCTTATGACTTCGGCACAGAAAGCAACGGACTATCAGCCCAGGCGCCGGTGGAGATCCATCTGACCAGCGGCCAGG AGCAGCAGCTCTGCGAGCTCGGCATCATCCCCGCCGCGACCACCTATCTCTCCTCTTCGGCGATTTTCAATTCCAATCAG TCCCTGCATGCGCCGCCGCACTATTCCAACGAGCATGCGCGCCAGAACGCCCGCCTCGCCGCGATGCTGCAATATGTGCT CTGCGCGTCGCGCTTCTCGCATTATCTCAAAGTCATCATGCGCGACGAGATCGGCCAGCTTTCGGATGCGATCTCGATCG AGCGGAAGCTGGCGGACTGGCTGACCGCCTATACGCTCGGCAACGACGACGCCGACATCGCGCTACGCACCCGCTTTCCC CTGCGCTCGGCCGGCATCGGCGTCGCAGAGATTCCGGGCAAGCCCGGCAGCTTCTCCTGTACCGTCCGGCTGCAGCCGCA TTTCCAGCTCGACGACGTTGCCACGAGCTTCCATCTCATCGCTGAGACCGCGACCACGGGCCAGATTTTGAGCCGCCCAG TTGCCATACCCGAGAGGATGTCCGCATGA
Upstream 100 bases:
>100_bases CGCCCGGATTCCCTCGAAGAACTGATGAAAGCGGGTCCAAGCGCGGCGGGTTGCCGCCGCGCTTGGACCTTGCGTTCGAA ACATCTGTGTCAGGTTGACG
Downstream 100 bases:
>100_bases CGCTTTCCGCCAGCATCGCCCAATCGCTCAGCGACAATGCCCTCGATGACGCGATCGAGGAGGTCAAGGCGCATCTGAAG GTCAAGCCCTCGGATCAGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MGSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLGVSWSELTRSMERASDF DQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGDPVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVN DFSWLANETARIRWNGLRAREDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNF IDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCELGIIPAATTYLSSSAIFNSNQ SLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLSDAISIERKLADWLTAYTLGNDDADIALRTRFP LRSAGIGVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA
Sequences:
>Translated_462_residues MGSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLGVSWSELTRSMERASDF DQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGDPVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVN DFSWLANETARIRWNGLRAREDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNF IDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCELGIIPAATTYLSSSAIFNSNQ SLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLSDAISIERKLADWLTAYTLGNDDADIALRTRFP LRSAGIGVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA >Mature_461_residues GSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKVKLLGVSWSELTRSMERASDFD QSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGDPVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVND FSWLANETARIRWNGLRAREDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNFI DSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCELGIIPAATTYLSSSAIFNSNQS LHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIMRDEIGQLSDAISIERKLADWLTAYTLGNDDADIALRTRFPL RSAGIGVAEIPGKPGSFSCTVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50587; Mature: 50456
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE KLLGVSWSELTRSMERASDFDQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGD EEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECEEECCCCCCCCC PVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVNDFSWLANETARIRWNGLRAR HHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHHHHHHHCCCHHHHHCCCEEEEECCCCCC EDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNF CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCHHHHHHHHHHHHH IDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCEL HCCCCCHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH GIIPAATTYLSSSAIFNSNQSLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIM CCCCHHHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDEIGQLSDAISIERKLADWLTAYTLGNDDADIALRTRFPLRSAGIGVAEIPGKPGSFSC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCCCEEECCCCCCCEEE TVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA EEEECCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHCCC >Mature Secondary Structure GSSTEWRRRADQLITLIDEALNKQVNAILHHPDFQAMEARWRGLAMLVREASRSGEVKV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEE KLLGVSWSELTRSMERASDFDQSHLFELIYSREFGMPGGEPLGLLVGDYYLSPADPAGGD EEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECEEECCCCCCCCC PVSTLSQIGMVAAAAFCPFVAGAAPLAIGLEDFHELNRVNDFSWLANETARIRWNGLRAR HHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHHHHHHHCCCHHHHHCCCEEEEECCCCCC EDSRFLGLVAPRILMRSPLTPHSRNRNDGFPFRESIAGDGSSLLWGNAAFAFATVVIRNF CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCHHHHHHHHHHHHH IDSGWFADIRGVTQDAVDGGLLSTAELPPYDFGTESNGLSAQAPVEIHLTSGQEQQLCEL HCCCCCHHHCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHH GIIPAATTYLSSSAIFNSNQSLHAPPHYSNEHARQNARLAAMLQYVLCASRFSHYLKVIM CCCCHHHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RDEIGQLSDAISIERKLADWLTAYTLGNDDADIALRTRFPLRSAGIGVAEIPGKPGSFSC HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHCCCCEEECCCCCCCEEE TVRLQPHFQLDDVATSFHLIAETATTGQILSRPVAIPERMSA EEEECCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA