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The map label for this gene is bexD [H]

Identifier: 116249126

GI number: 116249126

Start: 495175

End: 496314

Strand: Direct

Name: bexD [H]

Synonym: pRL120461

Alternate gene names: 116249126

Gene position: 495175-496314 (Clockwise)

Preceding gene: 116249122

Following gene: 116249141

Centisome position: 56.92

GC content: 63.95

Gene sequence:

>1140_bases
ATGCGAAAGTTGGCGCCGCTCGTCCTTGTCGCAGTTCTTAGTGCCTGCGCCCGGCCATCGGATGGCCCAACCGCCGGTGG
TTTCTATAATGCCACCGCCCCTCAGAGCAACGAGCGGATTCCGGTCGTCAGGCTCTCGGAAGCGCCGATGGGTCCGGTTG
CGGCCACCCCGCTTGCCTATGCGGCCACCGATCCCGGGCTCAGCCTCATGCGCTCGAGCGGATTTGCCGATACGAGGCTG
CGACGCGGCGATGTCATCGAGGTCACGATCCTCGACACCGGCGAAGAGGGGCTTTTCTCTTCAACCCAAAGCAAGACCCT
CAATCTCGGCCGCTTCACCGTCGATTCCACGGGCAACGTGACCCTTCCCTTCGTCGGCAAACAGCGCGTGGTGGATTCCT
CGACCGAGGCGCTGCAGACGCGCATCGTCACCGGCTTGAAGGGGTCGGCGGTCAATCCGCAGGCCGTCGTCACCGTGGTC
GACAGGCCCTCCAGCGGTATCACCGTCAATGGCGACGTGCGTGCCGCCGGTCGCTTCCCGCTCACAGCGCGCAAGGAGCG
TGTACTCGATGCGGTCGCACTTGCCGGCGGCGCATCGTCTGCGCCGGGCTCGGCGACCGTCACGCTGATGCGCGGCAAGC
AGCGCGCCACCGTGCCGCTCCAGCGCGTCATCGACGACAACAAACAGAATGTCTACCTTCTGCCCGACGACCAGATCTAC
GTCGACAAGGATTCACCCACCTTCACCGCTTTCGGCGCCTTCAAGAGTGTCGGCGAGTTCGAATTCGAGCCGGGCAGGCT
GACGCTTGCCCAGGCGCTCGGGCGAGCCGGCGGCCTGCTCGACGATCGTGCCGATGCGCGCAATTTCTATGTGCTGCGCA
GCCAGCCGGTCTTTACGCAGGTTGCGGCCGCAAATGCCAAGACCCCCGTGCCGGCTGTGGTGAGCACCAAGCCGGTGATC
TATCGCGTCGATCTGAAGGACGTTTCCAATCTGGCGCTGATGCAGCGGTTCCAGATGATGGATGGCGATATCATCTACGC
CAGCAACGCCAGCCTGGTGGACTTTGCCAAGCTCTTCAACGTGTACCAGAAAAGCGTGCCGACGGCCGCAGCACCGATCC
CGGGGTCGAGCGGCAATTAA

Upstream 100 bases:

>100_bases
TCCGGACTGTCATAATTGATTTTTCGCGCGCAACTGGTATTGCTCGGTCGTTCACCGCTGATATTTTTCGATTCTCTCAA
TATTGCCAAAAGGATACCTG

Downstream 100 bases:

>100_bases
GCATCGACAACAGGACGTTTTGCGGAGCCGCCCAGCAGACGCAAGGCGGCTCTTGCATTTTCGGGCCTGTCCTGCGGATC
CTGTTGGGACAGGCGGTTCG

Product: putative capsule polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MRKLAPLVLVAVLSACARPSDGPTAGGFYNATAPQSNERIPVVRLSEAPMGPVAATPLAYAATDPGLSLMRSSGFADTRL
RRGDVIEVTILDTGEEGLFSSTQSKTLNLGRFTVDSTGNVTLPFVGKQRVVDSSTEALQTRIVTGLKGSAVNPQAVVTVV
DRPSSGITVNGDVRAAGRFPLTARKERVLDAVALAGGASSAPGSATVTLMRGKQRATVPLQRVIDDNKQNVYLLPDDQIY
VDKDSPTFTAFGAFKSVGEFEFEPGRLTLAQALGRAGGLLDDRADARNFYVLRSQPVFTQVAAANAKTPVPAVVSTKPVI
YRVDLKDVSNLALMQRFQMMDGDIIYASNASLVDFAKLFNVYQKSVPTAAAPIPGSSGN

Sequences:

>Translated_379_residues
MRKLAPLVLVAVLSACARPSDGPTAGGFYNATAPQSNERIPVVRLSEAPMGPVAATPLAYAATDPGLSLMRSSGFADTRL
RRGDVIEVTILDTGEEGLFSSTQSKTLNLGRFTVDSTGNVTLPFVGKQRVVDSSTEALQTRIVTGLKGSAVNPQAVVTVV
DRPSSGITVNGDVRAAGRFPLTARKERVLDAVALAGGASSAPGSATVTLMRGKQRATVPLQRVIDDNKQNVYLLPDDQIY
VDKDSPTFTAFGAFKSVGEFEFEPGRLTLAQALGRAGGLLDDRADARNFYVLRSQPVFTQVAAANAKTPVPAVVSTKPVI
YRVDLKDVSNLALMQRFQMMDGDIIYASNASLVDFAKLFNVYQKSVPTAAAPIPGSSGN
>Mature_379_residues
MRKLAPLVLVAVLSACARPSDGPTAGGFYNATAPQSNERIPVVRLSEAPMGPVAATPLAYAATDPGLSLMRSSGFADTRL
RRGDVIEVTILDTGEEGLFSSTQSKTLNLGRFTVDSTGNVTLPFVGKQRVVDSSTEALQTRIVTGLKGSAVNPQAVVTVV
DRPSSGITVNGDVRAAGRFPLTARKERVLDAVALAGGASSAPGSATVTLMRGKQRATVPLQRVIDDNKQNVYLLPDDQIY
VDKDSPTFTAFGAFKSVGEFEFEPGRLTLAQALGRAGGLLDDRADARNFYVLRSQPVFTQVAAANAKTPVPAVVSTKPVI
YRVDLKDVSNLALMQRFQMMDGDIIYASNASLVDFAKLFNVYQKSVPTAAAPIPGSSGN

Specific function: May form an ATP-driven capsule polysaccharide export apparatus, in association with the BexA, BexB and BexC proteins. May function as a membrane anchor for capsular polysaccharides. Possible porin properties [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=295, Percent_Identity=25.7627118644068, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788376, Length=299, Percent_Identity=24.4147157190635, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 40050; Mature: 40050

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLAPLVLVAVLSACARPSDGPTAGGFYNATAPQSNERIPVVRLSEAPMGPVAATPLAY
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
AATDPGLSLMRSSGFADTRLRRGDVIEVTILDTGEEGLFSSTQSKTLNLGRFTVDSTGNV
EECCCCHHHHHCCCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCE
TLPFVGKQRVVDSSTEALQTRIVTGLKGSAVNPQAVVTVVDRPSSGITVNGDVRAAGRFP
EEEECCCCHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEECCCEEECCCCC
LTARKERVLDAVALAGGASSAPGSATVTLMRGKQRATVPLQRVIDDNKQNVYLLPDDQIY
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEE
VDKDSPTFTAFGAFKSVGEFEFEPGRLTLAQALGRAGGLLDDRADARNFYVLRSQPVFTQ
EECCCCCEEEHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
VAAANAKTPVPAVVSTKPVIYRVDLKDVSNLALMQRFQMMDGDIIYASNASLVDFAKLFN
HHHCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
VYQKSVPTAAAPIPGSSGN
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKLAPLVLVAVLSACARPSDGPTAGGFYNATAPQSNERIPVVRLSEAPMGPVAATPLAY
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEE
AATDPGLSLMRSSGFADTRLRRGDVIEVTILDTGEEGLFSSTQSKTLNLGRFTVDSTGNV
EECCCCHHHHHCCCCCHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECEEEECCCCCE
TLPFVGKQRVVDSSTEALQTRIVTGLKGSAVNPQAVVTVVDRPSSGITVNGDVRAAGRFP
EEEECCCCHHCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEECCCEEECCCCC
LTARKERVLDAVALAGGASSAPGSATVTLMRGKQRATVPLQRVIDDNKQNVYLLPDDQIY
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEE
VDKDSPTFTAFGAFKSVGEFEFEPGRLTLAQALGRAGGLLDDRADARNFYVLRSQPVFTQ
EECCCCCEEEHHHHHCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHH
VAAANAKTPVPAVVSTKPVIYRVDLKDVSNLALMQRFQMMDGDIIYASNASLVDFAKLFN
HHHCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
VYQKSVPTAAAPIPGSSGN
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2082145 [H]