Click here to switch to the map view.

The map label for this gene is 116249141

Identifier: 116249141

GI number: 116249141

Start: 517603

End: 518079

Strand: Direct

Name: 116249141

Synonym: pRL120477

Alternate gene names: NA

Gene position: 517603-518079 (Clockwise)

Preceding gene: 116249126

Following gene: 116249142

Centisome position: 59.49

GC content: 57.23

Gene sequence:

>477_bases
ATGCCGATTTATCTTCAGATCGACGGTATCCAGGGGGATGCTACCCACGAGCAGCATCGCAAATGGATGGATATCGAAGC
CATCCACTGGAATGTAGCCCGCAACATGAACACGTCCGCTGGTTCGGCGGCGAACCGTGAAGCTTCCGAGCCGACCGTTT
CGGAAGTGATCCTCACCAAGGTCAGCGACTCCTCGTCGACCAAGCTTTTCCAGGAGGCCTGCTCGGGCCGTACCGGCAAG
CGCTCCGTCATCCATCTCGTCACCACGGGCAATCCTGGCGACACCTATATCGAGTACTCCCTCGAAAATACGCTGATCGC
CAGCTACTCGATCGATTCCAACGGCGACCGCCCGGTCGAGACGATCAAGCTGAACTTCACCAAGATGGAAGTGAAGTACA
CGCCTTACGACGACAAGCACTCGCCGCAGTCGCCGATGATCGCTTCTTACGATCTCGCGACCACCAAGGCCGCTTAA

Upstream 100 bases:

>100_bases
TAACCCCGAGCCGCAAGCGCACTCGGGGAGCAGCGAGAAGAAAGGCAACTACGCCTTAGACGCAACTAGGCACTCAACCG
CCAACAGGAGAGCTGACAGC

Downstream 100 bases:

>100_bases
GGTTTCCCGACACAGGCAGTGCCAGCCCTGGCTGGCACTGCGACCCGTGTTTTCGGTTGTCTTTTCCATTCCTGGGGGAG
GCCAATCAAACAGCTGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Hemolysin-Coregulated Protein; Histidine Kinase; Type VI Secretion System Effector Hcp1 Family; SciM Protein

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGK
RSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA

Sequences:

>Translated_158_residues
MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGK
RSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA
>Mature_157_residues
PIYLQIDGIQGDATHEQHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTVSEVILTKVSDSSSTKLFQEACSGRTGKR
SVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVETIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17472; Mature: 17340

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIYLQIDGIQGDATHEQHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTVSEVILTK
CEEEEEEECCCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEEE
VSDSSSTKLFQEACSGRTGKRSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVE
CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCEE
TIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA
EEEEEEEEEEEEECCCCCCCCCCCCCEEEECCEECCCC
>Mature Secondary Structure 
PIYLQIDGIQGDATHEQHRKWMDIEAIHWNVARNMNTSAGSAANREASEPTVSEVILTK
EEEEEEECCCCCCCHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHEEEEE
VSDSSSTKLFQEACSGRTGKRSVIHLVTTGNPGDTYIEYSLENTLIASYSIDSNGDRPVE
CCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCEE
TIKLNFTKMEVKYTPYDDKHSPQSPMIASYDLATTKAA
EEEEEEEEEEEEECCCCCCCCCCCCCEEEECCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA