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The map label for this gene is yliD [C]

Identifier: 116248996

GI number: 116248996

Start: 351676

End: 352554

Strand: Direct

Name: yliD [C]

Synonym: pRL120327

Alternate gene names: 116248996

Gene position: 351676-352554 (Clockwise)

Preceding gene: 116248995

Following gene: 116248997

Centisome position: 40.42

GC content: 63.82

Gene sequence:

>879_bases
ATGCTGGCACACTCTTCCGAACGCCGGAGCCCCGGACCACTGGCCCGCGCCTTCAGTCGGTTTCTGCTCAACCGCGCAGC
CGTTGCCGGCGTCTGCATTGCCATTCCGATGCTGCTGTTGATCCTCTCCTATCCGTTATGGTGGGCTTTCCGGCCGAACG
ACATCGATCTTCTGGCCATGAATAGCGGCCCAACGGCAACGCACTGGTTCGGAGCCGACGGCGTCGGTCGCGACGTCTTC
GCCCGCGTGCTCGAAGGCGGCAGGATTTCGCTGCTGGTCGCCGTCGCATCCACCGCGCTTTCGGCGGTCATCGGTTTTCT
TTTCGGGGCAATCTCGGCGCTTGCGGGACGTTGGACGGACGCCGTCTCGATGCGCTTCGTCGATCTGGTGATGACCCTGC
CGCCCGTCATTTTCCTGCTTGTGCTCGCCTCGATTGCCGGCACCGGCATCTGGCCGACCGTGCTGGTCATCTCGCTGCTT
TCCTGGCCGCTGCTTGCGCGCATGATCCGCTCTCGATTGCTGGAATTGCGCGAGCGCGACTTCGTCATGGCTGCCCGCGG
CATGGGCGCCGGCATCGGACATCTGCTCTTTCGCCACGGCCTGCCGAACTCGATCGATATCCTGGTGGTCTATGCAACGT
TGCAGATCGCCAATGCCATCCTGCTCGAGGCGGGGCTGTCCTTTCTCGGTCTCGGCATCGCCCCGCCGGCGGCAAGCTGG
GGCAACATGCTGAACGCGGCCCGCTCGACCGCCGTGCTCGAACAATATCCGTGGCAATGGCTCTTCCCCGGCGCCGCGCT
CATCCTTGCCGTCCTGGCGATCAACTTCATTGGCGATGGCCTCAGAGATGCCTTCGACCCACGTGCCGAACTGAACTGA

Upstream 100 bases:

>100_bases
TGGGGGCAACGCTCGTCATCGGCGCCTGCGTTATCGTCGTCAATCTTCTGACCGATATCACTTATGCGGTCGTCGACCCG
CGCATCAAGGTGGGTTGATC

Downstream 100 bases:

>100_bases
CAATCGAAAGAAGCGAAAATGACCAAATTCAAGGGTGTCGTCCCTCCCGTCGTAACGCCGCTCAATCCGGATCTCACCGT
CGATTACCCATCCTATACAC

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MLAHSSERRSPGPLARAFSRFLLNRAAVAGVCIAIPMLLLILSYPLWWAFRPNDIDLLAMNSGPTATHWFGADGVGRDVF
ARVLEGGRISLLVAVASTALSAVIGFLFGAISALAGRWTDAVSMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVLVISLL
SWPLLARMIRSRLLELRERDFVMAARGMGAGIGHLLFRHGLPNSIDILVVYATLQIANAILLEAGLSFLGLGIAPPAASW
GNMLNAARSTAVLEQYPWQWLFPGAALILAVLAINFIGDGLRDAFDPRAELN

Sequences:

>Translated_292_residues
MLAHSSERRSPGPLARAFSRFLLNRAAVAGVCIAIPMLLLILSYPLWWAFRPNDIDLLAMNSGPTATHWFGADGVGRDVF
ARVLEGGRISLLVAVASTALSAVIGFLFGAISALAGRWTDAVSMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVLVISLL
SWPLLARMIRSRLLELRERDFVMAARGMGAGIGHLLFRHGLPNSIDILVVYATLQIANAILLEAGLSFLGLGIAPPAASW
GNMLNAARSTAVLEQYPWQWLFPGAALILAVLAINFIGDGLRDAFDPRAELN
>Mature_292_residues
MLAHSSERRSPGPLARAFSRFLLNRAAVAGVCIAIPMLLLILSYPLWWAFRPNDIDLLAMNSGPTATHWFGADGVGRDVF
ARVLEGGRISLLVAVASTALSAVIGFLFGAISALAGRWTDAVSMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVLVISLL
SWPLLARMIRSRLLELRERDFVMAARGMGAGIGHLLFRHGLPNSIDILVVYATLQIANAILLEAGLSFLGLGIAPPAASW
GNMLNAARSTAVLEQYPWQWLFPGAALILAVLAINFIGDGLRDAFDPRAELN

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=238, Percent_Identity=39.4957983193277, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787760, Length=262, Percent_Identity=39.3129770992366, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787498, Length=271, Percent_Identity=38.3763837638376, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1789889, Length=247, Percent_Identity=39.6761133603239, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1789964, Length=230, Percent_Identity=40, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788505, Length=230, Percent_Identity=30.8695652173913, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787549, Length=288, Percent_Identity=28.8194444444444, Blast_Score=107, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31406; Mature: 31406

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHSSERRSPGPLARAFSRFLLNRAAVAGVCIAIPMLLLILSYPLWWAFRPNDIDLLAM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEE
NSGPTATHWFGADGVGRDVFARVLEGGRISLLVAVASTALSAVIGFLFGAISALAGRWTD
CCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVSMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVLVISLLSWPLLARMIRSRLLELRERD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVMAARGMGAGIGHLLFRHGLPNSIDILVVYATLQIANAILLEAGLSFLGLGIAPPAASW
HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GNMLNAARSTAVLEQYPWQWLFPGAALILAVLAINFIGDGLRDAFDPRAELN
HHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLAHSSERRSPGPLARAFSRFLLNRAAVAGVCIAIPMLLLILSYPLWWAFRPNDIDLLAM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCEEEEEE
NSGPTATHWFGADGVGRDVFARVLEGGRISLLVAVASTALSAVIGFLFGAISALAGRWTD
CCCCCCCEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVSMRFVDLVMTLPPVIFLLVLASIAGTGIWPTVLVISLLSWPLLARMIRSRLLELRERD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVMAARGMGAGIGHLLFRHGLPNSIDILVVYATLQIANAILLEAGLSFLGLGIAPPAASW
HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GNMLNAARSTAVLEQYPWQWLFPGAALILAVLAINFIGDGLRDAFDPRAELN
HHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA