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The map label for this gene is yliC [C]

Identifier: 116248995

GI number: 116248995

Start: 350714

End: 351673

Strand: Direct

Name: yliC [C]

Synonym: pRL120326A

Alternate gene names: 116248995

Gene position: 350714-351673 (Clockwise)

Preceding gene: 116248994

Following gene: 116248996

Centisome position: 40.31

GC content: 60.73

Gene sequence:

>960_bases
ATGCTCCAATACAGTCTCAGACGCCTGGTCATAGGAATAGGCATGCTCGTTGCCCTGAGCATGCTGATCTTCCTGCTGCT
GCGCCTGACGCCCGGCGATCCGATCGATGCCTATATCGATCCGAACCTGCCGATGTCGCCGTCAGACCTTGCCGATCTGC
GCAGAAGCCTCGGGCTCGATCAGCCCTTGCCCGCGCAGTATCTGGGCTGGTTGCAGCAGGCGTTGACGGGCAATCTCGGC
TATTCGATCAAGCGTATCGATCAGCCGGTTCTGGGCCTGGTGCTGTCACGGATCGGCCCGACAGTGCTCTTGATGGGCAC
CGCACTTGCCTTTGCCATCGTCGCAGGCATCACCTGCGGGGTGATCGGCGCCGTCCGCCGCAATTCGCTTGCCGATCTCT
CCTTATCGGTGGTTGCGCTTGCCGGCATTTCGAGCCCAGCCTTCCTCAGCGCGCTGATCGGCCTTTATATTTTTTCCGTT
CGTCTGCACTGGATGCCATCAGGCGGCATGCTGACGCCGGGCGAGGAATTCTCGCTCGGCGACCTCCTCCACCATCTGAT
CCTGCCGGCAGCACTTCTGTCTGTCGCGCAAGCCGCATTGATCATGCGTTACATGCGCGCTTCGCTGCTCGAAGTCCTGA
ACCAGGATTACGTGCGCACCGCCCGCGCCAAGGGCGTTCGCGAATTCTGGGTCATCACCAAGCATGCCTTGCGCAATGCG
CTTCTTCCGATCGTCACGCTGATCGGCTCCACCATCGGGCTTGCAATCGGCGGCGCCATCTTCATCGAGAGCGTCTTCAA
CTGGCCGGGCATGGGGCTCTTGCTCGTCGATGCCGTGCAGACCCGCGATTACCCCGTCATCATGGGGGCAACGCTCGTCA
TCGGCGCCTGCGTTATCGTCGTCAATCTTCTGACCGATATCACTTATGCGGTCGTCGACCCGCGCATCAAGGTGGGTTGA

Upstream 100 bases:

>100_bases
CCCTACCAGGCCAACCCGCAGAAATGGTCGATCGCCGAATAGGCTCTTTCCGGGAAAGCCTTGAGGGTGGCCTCGGCCAC
CCTGACAAGACGGATGAACC

Downstream 100 bases:

>100_bases
TCATGCTGGCACACTCTTCCGAACGCCGGAGCCCCGGACCACTGGCCCGCGCCTTCAGTCGGTTTCTGCTCAACCGCGCA
GCCGTTGCCGGCGTCTGCAT

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLADLRRSLGLDQPLPAQYLGWLQQALTGNLG
YSIKRIDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV
RLHWMPSGGMLTPGEEFSLGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA
LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRIKVG

Sequences:

>Translated_319_residues
MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLADLRRSLGLDQPLPAQYLGWLQQALTGNLG
YSIKRIDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV
RLHWMPSGGMLTPGEEFSLGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA
LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRIKVG
>Mature_319_residues
MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLADLRRSLGLDQPLPAQYLGWLQQALTGNLG
YSIKRIDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCGVIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSV
RLHWMPSGGMLTPGEEFSLGDLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA
LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIVVNLLTDITYAVVDPRIKVG

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=317, Percent_Identity=41.3249211356467, Blast_Score=243, Evalue=9e-66,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=39.5280235988201, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=39.937106918239, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=35.3312302839117, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1787761, Length=336, Percent_Identity=35.1190476190476, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1787550, Length=299, Percent_Identity=28.0936454849498, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.5927977839335, Blast_Score=115, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34200; Mature: 34200

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLADLRRSLGLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCC
QPLPAQYLGWLQQALTGNLGYSIKRIDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCG
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVRLHWMPSGGMLTPGEEFSLG
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHH
DLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VNLLTDITYAVVDPRIKVG
HHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLQYSLRRLVIGIGMLVALSMLIFLLLRLTPGDPIDAYIDPNLPMSPSDLADLRRSLGLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCC
QPLPAQYLGWLQQALTGNLGYSIKRIDQPVLGLVLSRIGPTVLLMGTALAFAIVAGITCG
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
VIGAVRRNSLADLSLSVVALAGISSPAFLSALIGLYIFSVRLHWMPSGGMLTPGEEFSLG
HHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHH
DLLHHLILPAALLSVAQAALIMRYMRASLLEVLNQDYVRTARAKGVREFWVITKHALRNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LLPIVTLIGSTIGLAIGGAIFIESVFNWPGMGLLLVDAVQTRDYPVIMGATLVIGACVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
VNLLTDITYAVVDPRIKVG
HHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA