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The map label for this gene is yagT [H]

Identifier: 116248971

GI number: 116248971

Start: 320498

End: 321145

Strand: Reverse

Name: yagT [H]

Synonym: pRL120302

Alternate gene names: 116248971

Gene position: 321145-320498 (Counterclockwise)

Preceding gene: 116248973

Following gene: 116248970

Centisome position: 36.91

GC content: 59.41

Gene sequence:

>648_bases
GTGGAACAGTTCATGCCAAGCCAGACACAACTGGAACTTTCCCGTCGAGATCTACTTATCTCGTCGGCCGCAACGATTGC
GGTCACCGCAGCCGTCGCGCCCGCGGCGGCACAGTCCCCAGGAAATGACATGGCCTATACATCCAAGGTTTCCTTCGCGG
TTAACGGTGAGAAGCGCGATCTCGAGGTCGACAACAGAACGTCGCTGCTCGACGCGTTGCGCGAGCACCTACATCTCACA
GGCACGAAAAAGGGATGCGACCACGGCCAATGCGGTGCATGCACCGTCATGGTCGACGGCCACCGCATCAATTCCTGCCT
GACGCTGGCGGTCATGCACGAAGGCGATCAAATCACCACGATCGAGGGCCTCGGCCAGCCTGAAAACCTTCATCCGATGC
AGGCGGCCTTCGTCAAGCATGACGGCTTCCAGTGCGGCTACTGCACGCCGGGACAGATCTGTTCCTCCGTGGCGGTGCTC
GAGGAGATCAAGGCGAATATACCGAGCCACGTCACCGGCGATCTTACGGCTCAGGCGGCCGTCACTGCGGCCGAGATCCG
CGAACGCATGAGCGGCAATATCTGTCGATGCGGCGCCTATTCCAACATTATCGATGCCATTTCGGAAGTCGCGGGGATTA
AAGCATGA

Upstream 100 bases:

>100_bases
CAGATCGATAACCGTATGCAACGGAAGGGGTCTAATCAGGAGGCGGAGTTGCACTACCTCAGCAGACGGCGTTGACGCGC
GCCTATGTCCAACGAGCAAG

Downstream 100 bases:

>100_bases
GAGCCTTCACTTATGAACGTGCCTCGTCCGTCGAGGCCGCGGCCAAGGCGGCAGCCTCCAATCCTGAAACCAAGTTCATC
GCCGGCGGCACCAACCTCCT

Product: putative xanthine dehydrogenase iron-sulfur-binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MEQFMPSQTQLELSRRDLLISSAATIAVTAAVAPAAAQSPGNDMAYTSKVSFAVNGEKRDLEVDNRTSLLDALREHLHLT
GTKKGCDHGQCGACTVMVDGHRINSCLTLAVMHEGDQITTIEGLGQPENLHPMQAAFVKHDGFQCGYCTPGQICSSVAVL
EEIKANIPSHVTGDLTAQAAVTAAEIRERMSGNICRCGAYSNIIDAISEVAGIKA

Sequences:

>Translated_215_residues
MEQFMPSQTQLELSRRDLLISSAATIAVTAAVAPAAAQSPGNDMAYTSKVSFAVNGEKRDLEVDNRTSLLDALREHLHLT
GTKKGCDHGQCGACTVMVDGHRINSCLTLAVMHEGDQITTIEGLGQPENLHPMQAAFVKHDGFQCGYCTPGQICSSVAVL
EEIKANIPSHVTGDLTAQAAVTAAEIRERMSGNICRCGAYSNIIDAISEVAGIKA
>Mature_215_residues
MEQFMPSQTQLELSRRDLLISSAATIAVTAAVAPAAAQSPGNDMAYTSKVSFAVNGEKRDLEVDNRTSLLDALREHLHLT
GTKKGCDHGQCGACTVMVDGHRINSCLTLAVMHEGDQITTIEGLGQPENLHPMQAAFVKHDGFQCGYCTPGQICSSVAVL
EEIKANIPSHVTGDLTAQAAVTAAEIRERMSGNICRCGAYSNIIDAISEVAGIKA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=175, Percent_Identity=36, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI71773480, Length=175, Percent_Identity=38.8571428571429, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1786480, Length=210, Percent_Identity=64.7619047619048, Blast_Score=268, Evalue=1e-73,
Organism=Escherichia coli, GI1789232, Length=161, Percent_Identity=37.2670807453416, Blast_Score=106, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17540638, Length=175, Percent_Identity=35.4285714285714, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17539860, Length=169, Percent_Identity=30.7692307692308, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32566215, Length=169, Percent_Identity=30.1775147928994, Blast_Score=86, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24647199, Length=168, Percent_Identity=36.3095238095238, Blast_Score=98, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17737937, Length=170, Percent_Identity=38.8235294117647, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24647197, Length=176, Percent_Identity=34.0909090909091, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24647195, Length=176, Percent_Identity=34.0909090909091, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24647201, Length=171, Percent_Identity=35.672514619883, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24647193, Length=155, Percent_Identity=34.8387096774194, Blast_Score=87, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 22784; Mature: 22784

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQFMPSQTQLELSRRDLLISSAATIAVTAAVAPAAAQSPGNDMAYTSKVSFAVNGEKRD
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEEECCCCCC
LEVDNRTSLLDALREHLHLTGTKKGCDHGQCGACTVMVDGHRINSCLTLAVMHEGDQITT
CCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCEEEE
IEGLGQPENLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLEEIKANIPSHVTGDLTAQAA
EECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VTAAEIRERMSGNICRCGAYSNIIDAISEVAGIKA
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQFMPSQTQLELSRRDLLISSAATIAVTAAVAPAAAQSPGNDMAYTSKVSFAVNGEKRD
CCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCHHCCCCCCCCEEEEEEEEEECCCCCC
LEVDNRTSLLDALREHLHLTGTKKGCDHGQCGACTVMVDGHRINSCLTLAVMHEGDQITT
CCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCEEEE
IEGLGQPENLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLEEIKANIPSHVTGDLTAQAA
EECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
VTAAEIRERMSGNICRCGAYSNIIDAISEVAGIKA
HHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]