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The map label for this gene is rbcR [H]

Identifier: 116248973

GI number: 116248973

Start: 322209

End: 323198

Strand: Reverse

Name: rbcR [H]

Synonym: pRL120304

Alternate gene names: 116248973

Gene position: 323198-322209 (Counterclockwise)

Preceding gene: 116248980

Following gene: 116248971

Centisome position: 37.15

GC content: 62.02

Gene sequence:

>990_bases
ATGCTGCACTCCAGACGCCTTCTCTACATCAACGAGATTGCCCGTTGTGGTTCGATCCGCAAGGCGGCCGCGCGCCTCAA
TGTTGCGTCATCGGCGGTCAACAGGCAGATTTTGGCGCTGGAGGAGGAGATCGGGGCGCCGCTTTTCGAGCGGCTGCCGC
GTGGCTTGCGGCTGACGGCTGCCGGCGAACTCTGCATCGAGCATATCCGGGACGTGCTGAAGAATTACGAGCGTCTGGAA
GGGCGCATCCGCAGCCTCAAGATGCAGCAGGCAGGCAAGGTGCGCATGGTGACCACCGTTGGGCTTGCCGCCGGACCGCT
GCCCGAAATCATCGCGCGCTTTCTTTCAGAACATCCGCGCGTTTTCGTCCAGCTGCGCAACGACACCGGCGGCACGACGG
CCAGCCCCGTTGTATCAGGCGAGGTGGATATCGGTCTTGGCTTCAACATCCCCGCCATGCCCGGCATCCGCACGCTCGGA
AATTTCGATATCCCGATCGGTGTCGTGCTGCCGCCGGGGCATCACCTGATCGGTCCCGGGCCGATCAACCTCGCCGATGT
CACCCAGGAAAAACTGGTTCTGGCGCAGCCGGGCACCAGCCTGCGCGAGGTGATCAACCTTGCTTTTGCGCGCCTGCCCA
TCTCGGTCGAGCCGGTGCTGGAAACCAATGCATCGGAGATGCTGAAACAGCTCGTCAAATGCGGCACGGGGCTGACGCTG
CTCAATCCGCTTGACGTCATCACCGAATGCCGGCGCGGTGAACTCGTCTTCCGGCCGATCGCCGAGCCGCATGCGCGTTA
CCAGCAGATGAAACTGTTTGCCCGCGCCCGTGCGCCGCTCGACGCGGCCACCAGCCTTTTCGTCGAATATCTGCTCGCTG
AACTGCTCGGCCTGGTGCAGGAATTGCAGGCCAAGGGTCATATCCCACCGGATGTGAAACCGGCGGCTGAACCTATTTCA
CATAGAGATTCGAAAGCGGATAGGCCTTGA

Upstream 100 bases:

>100_bases
AAAGCATCAAAATTCGTGCGCATTGATGCCTTTTCGGCATCTGTCGGAAAGCTGAAAATAATTTGTGCGCTCTGCGCAAA
ATTTATGCATCGGAGAGACC

Downstream 100 bases:

>100_bases
GGTCCCGGAGCAGCTCGACGAACCCCTTGACTTGATGGCGGCAGATCGCCTCGCCCTTTTCGGCAGTGGCAATCGAGGCA
TCGCCGACCACGCCGAAGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLHSRRLLYINEIARCGSIRKAAARLNVASSAVNRQILALEEEIGAPLFERLPRGLRLTAAGELCIEHIRDVLKNYERLE
GRIRSLKMQQAGKVRMVTTVGLAAGPLPEIIARFLSEHPRVFVQLRNDTGGTTASPVVSGEVDIGLGFNIPAMPGIRTLG
NFDIPIGVVLPPGHHLIGPGPINLADVTQEKLVLAQPGTSLREVINLAFARLPISVEPVLETNASEMLKQLVKCGTGLTL
LNPLDVITECRRGELVFRPIAEPHARYQQMKLFARARAPLDAATSLFVEYLLAELLGLVQELQAKGHIPPDVKPAAEPIS
HRDSKADRP

Sequences:

>Translated_329_residues
MLHSRRLLYINEIARCGSIRKAAARLNVASSAVNRQILALEEEIGAPLFERLPRGLRLTAAGELCIEHIRDVLKNYERLE
GRIRSLKMQQAGKVRMVTTVGLAAGPLPEIIARFLSEHPRVFVQLRNDTGGTTASPVVSGEVDIGLGFNIPAMPGIRTLG
NFDIPIGVVLPPGHHLIGPGPINLADVTQEKLVLAQPGTSLREVINLAFARLPISVEPVLETNASEMLKQLVKCGTGLTL
LNPLDVITECRRGELVFRPIAEPHARYQQMKLFARARAPLDAATSLFVEYLLAELLGLVQELQAKGHIPPDVKPAAEPIS
HRDSKADRP
>Mature_329_residues
MLHSRRLLYINEIARCGSIRKAAARLNVASSAVNRQILALEEEIGAPLFERLPRGLRLTAAGELCIEHIRDVLKNYERLE
GRIRSLKMQQAGKVRMVTTVGLAAGPLPEIIARFLSEHPRVFVQLRNDTGGTTASPVVSGEVDIGLGFNIPAMPGIRTLG
NFDIPIGVVLPPGHHLIGPGPINLADVTQEKLVLAQPGTSLREVINLAFARLPISVEPVLETNASEMLKQLVKCGTGLTL
LNPLDVITECRRGELVFRPIAEPHARYQQMKLFARARAPLDAATSLFVEYLLAELLGLVQELQAKGHIPPDVKPAAEPIS
HRDSKADRP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=246, Percent_Identity=26.0162601626016, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787879, Length=266, Percent_Identity=27.4436090225564, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788887, Length=262, Percent_Identity=28.6259541984733, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790399, Length=298, Percent_Identity=25.8389261744966, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI2367136, Length=258, Percent_Identity=25.1937984496124, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=29.3103448275862, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787530, Length=316, Percent_Identity=22.4683544303797, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789204, Length=301, Percent_Identity=23.2558139534884, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082132, Length=263, Percent_Identity=23.1939163498099, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=27.8225806451613, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=263, Percent_Identity=24.3346007604563, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788481, Length=239, Percent_Identity=24.6861924686192, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=21.9512195121951, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=280, Percent_Identity=22.5, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789440, Length=297, Percent_Identity=23.2323232323232, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=25.6140350877193, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35899; Mature: 35899

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHSRRLLYINEIARCGSIRKAAARLNVASSAVNRQILALEEEIGAPLFERLPRGLRLTA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEH
AGELCIEHIRDVLKNYERLEGRIRSLKMQQAGKVRMVTTVGLAAGPLPEIIARFLSEHPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
VFVQLRNDTGGTTASPVVSGEVDIGLGFNIPAMPGIRTLGNFDIPIGVVLPPGHHLIGPG
EEEEEECCCCCCCCCCEEECCEEECCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCC
PINLADVTQEKLVLAQPGTSLREVINLAFARLPISVEPVLETNASEMLKQLVKCGTGLTL
CCCHHHHCHHHEEEECCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCEE
LNPLDVITECRRGELVFRPIAEPHARYQQMKLFARARAPLDAATSLFVEYLLAELLGLVQ
CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ELQAKGHIPPDVKPAAEPISHRDSKADRP
HHHHCCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLHSRRLLYINEIARCGSIRKAAARLNVASSAVNRQILALEEEIGAPLFERLPRGLRLTA
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEH
AGELCIEHIRDVLKNYERLEGRIRSLKMQQAGKVRMVTTVGLAAGPLPEIIARFLSEHPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCE
VFVQLRNDTGGTTASPVVSGEVDIGLGFNIPAMPGIRTLGNFDIPIGVVLPPGHHLIGPG
EEEEEECCCCCCCCCCEEECCEEECCCCCCCCCCCCHHCCCCCCCEEEEECCCCCCCCCC
PINLADVTQEKLVLAQPGTSLREVINLAFARLPISVEPVLETNASEMLKQLVKCGTGLTL
CCCHHHHCHHHEEEECCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHCCCCCEE
LNPLDVITECRRGELVFRPIAEPHARYQQMKLFARARAPLDAATSLFVEYLLAELLGLVQ
CCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
ELQAKGHIPPDVKPAAEPISHRDSKADRP
HHHHCCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]