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The map label for this gene is yagS [H]

Identifier: 116248970

GI number: 116248970

Start: 319551

End: 320501

Strand: Reverse

Name: yagS [H]

Synonym: pRL120301

Alternate gene names: 116248970

Gene position: 320501-319551 (Counterclockwise)

Preceding gene: 116248971

Following gene: 116248969

Centisome position: 36.84

GC content: 65.51

Gene sequence:

>951_bases
ATGAGAGCCTTCACTTATGAACGTGCCTCGTCCGTCGAGGCCGCGGCCAAGGCGGCAGCCTCCAATCCTGAAACCAAGTT
CATCGCCGGCGGCACCAACCTCCTCGACCTGATGAAGCTCGAGATCGAAACGCCAACGCATCTGATCGATGTCAACGGTG
TCGGCCTCGACAAGATCGAACCCACGCCGCAGGGCGGGCTGCGCATCGGCGCCTTGGTCCGCAACACCGATCTTGCAGCT
CATGAGACCGTTCGCCGCGACTACAGCCTGATCTCCAGGGCGCTTGTCGCGGGCGCCTCCGGGCAACTGCGCAACAAGGC
GACGACGGCCGGCAACCTCCTGCAGCGCACGCGCTGTCCTTATTTCTATGACCCGAACCAGCCGTGCAACAAGCGGCAGC
CGGGCAGCGGCTGTTCCGCCATCGGCGGCTTCAGCCGCCAGCATGCCGTCGTCGGCACCAGCGAAGCTTGCATCGCCACT
CACCCGAGTGACATGGCCATCGCCATGCGGGCGCTCGATGCTGTTGTGGAAACGGTCAAGGCCGACGGAAGTCGCCGCGC
GATTGCGATCGCCGACTTTCATCGGTTGCCCGGCGACACGCCTGATATCGAAACCGTTCTTGAGCGCGGCGAGTTGATCA
CGGCGGTCCTGCTGCCACCCCCGATCGGCGGCAAGCACATCTATCGCAAGGTGCGAGACCGCGCCTCCTATGCCTTTGCG
CTGGTCTCGGTCGGAGCCGTGATCCAGCCGGATGGGACAGGACGTCTCGCCGTCGGCGGCGTCGCCCACAAACCGTGGCG
CATCGAGGCCGCCGAAGCCGAGCTGCCGAAAGGCGCGCGGGCGGTGGCAGGCGTGCTTCTTGCCGGCGCGCACCCGACCG
AACAGAACCGTTTCAAGGTCGACCTGGTCGAGCGCACGCTCGGCGCGGTCATTGCCGAAGCAAGGGGTTGA

Upstream 100 bases:

>100_bases
CTGCGGCCGAGATCCGCGAACGCATGAGCGGCAATATCTGTCGATGCGGCGCCTATTCCAACATTATCGATGCCATTTCG
GAAGTCGCGGGGATTAAAGC

Downstream 100 bases:

>100_bases
GCCATGCAGTTCGATACGCCAGCGACAACCAACCCGATCGACAATCTGAAGGTCGTCGGCCAGCCGATCCACCGCATCGA
TGGTCAGCTCAAGACGACCG

Product: putative xanthine dehydrogenase YagS, fad binding subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MRAFTYERASSVEAAAKAAASNPETKFIAGGTNLLDLMKLEIETPTHLIDVNGVGLDKIEPTPQGGLRIGALVRNTDLAA
HETVRRDYSLISRALVAGASGQLRNKATTAGNLLQRTRCPYFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGTSEACIAT
HPSDMAIAMRALDAVVETVKADGSRRAIAIADFHRLPGDTPDIETVLERGELITAVLLPPPIGGKHIYRKVRDRASYAFA
LVSVGAVIQPDGTGRLAVGGVAHKPWRIEAAEAELPKGARAVAGVLLAGAHPTEQNRFKVDLVERTLGAVIAEARG

Sequences:

>Translated_316_residues
MRAFTYERASSVEAAAKAAASNPETKFIAGGTNLLDLMKLEIETPTHLIDVNGVGLDKIEPTPQGGLRIGALVRNTDLAA
HETVRRDYSLISRALVAGASGQLRNKATTAGNLLQRTRCPYFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGTSEACIAT
HPSDMAIAMRALDAVVETVKADGSRRAIAIADFHRLPGDTPDIETVLERGELITAVLLPPPIGGKHIYRKVRDRASYAFA
LVSVGAVIQPDGTGRLAVGGVAHKPWRIEAAEAELPKGARAVAGVLLAGAHPTEQNRFKVDLVERTLGAVIAEARG
>Mature_316_residues
MRAFTYERASSVEAAAKAAASNPETKFIAGGTNLLDLMKLEIETPTHLIDVNGVGLDKIEPTPQGGLRIGALVRNTDLAA
HETVRRDYSLISRALVAGASGQLRNKATTAGNLLQRTRCPYFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGTSEACIAT
HPSDMAIAMRALDAVVETVKADGSRRAIAIADFHRLPGDTPDIETVLERGELITAVLLPPPIGGKHIYRKVRDRASYAFA
LVSVGAVIQPDGTGRLAVGGVAHKPWRIEAAEAELPKGARAVAGVLLAGAHPTEQNRFKVDLVERTLGAVIAEARG

Specific function: Unknown

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786479, Length=315, Percent_Identity=75.5555555555556, Blast_Score=491, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 33463; Mature: 33463

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFTYERASSVEAAAKAAASNPETKFIAGGTNLLDLMKLEIETPTHLIDVNGVGLDKIE
CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHEEEECCCCEEEEECCCCCCCCC
PTPQGGLRIGALVRNTDLAAHETVRRDYSLISRALVAGASGQLRNKATTAGNLLQRTRCP
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
YFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGTSEACIATHPSDMAIAMRALDAVVETVK
CEECCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHH
ADGSRRAIAIADFHRLPGDTPDIETVLERGELITAVLLPPPIGGKHIYRKVRDRASYAFA
CCCCCCEEEEEEHHHCCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
LVSVGAVIQPDGTGRLAVGGVAHKPWRIEAAEAELPKGARAVAGVLLAGAHPTEQNRFKV
HHHCCEEECCCCCCCEEECCCCCCCEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEH
DLVERTLGAVIAEARG
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAFTYERASSVEAAAKAAASNPETKFIAGGTNLLDLMKLEIETPTHLIDVNGVGLDKIE
CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCEEHHEEEECCCCEEEEECCCCCCCCC
PTPQGGLRIGALVRNTDLAAHETVRRDYSLISRALVAGASGQLRNKATTAGNLLQRTRCP
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
YFYDPNQPCNKRQPGSGCSAIGGFSRQHAVVGTSEACIATHPSDMAIAMRALDAVVETVK
CEECCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCEEEECCCHHHHHHHHHHHHHHHHH
ADGSRRAIAIADFHRLPGDTPDIETVLERGELITAVLLPPPIGGKHIYRKVRDRASYAFA
CCCCCCEEEEEEHHHCCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
LVSVGAVIQPDGTGRLAVGGVAHKPWRIEAAEAELPKGARAVAGVLLAGAHPTEQNRFKV
HHHCCEEECCCCCCCEEECCCCCCCEEEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEH
DLVERTLGAVIAEARG
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]