| Definition | Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12, complete sequence. |
|---|---|
| Accession | NC_008378 |
| Length | 870,021 |
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The map label for this gene is 116248837
Identifier: 116248837
GI number: 116248837
Start: 166225
End: 167235
Strand: Reverse
Name: 116248837
Synonym: pRL120166
Alternate gene names: NA
Gene position: 167235-166225 (Counterclockwise)
Preceding gene: 116248838
Following gene: 116248836
Centisome position: 19.22
GC content: 61.42
Gene sequence:
>1011_bases ATGGTTCGACCGGTCCGTGCGATCGTCATTGCAGTGCTTGTGTTGCTTGTCGCCTTCGCATCGGCCTGGTCGTCGCTCGC GCTTTGGTACCGCTTGCCATTGCCCGAGGTCGGCAGGCAAGCCAGCGCCATCTTGTTCGGGCTTCTTGGCGCCTGGGTCA TCGTGGCGCTCTTCGGCAGGAGGCGCTTTCGTGCGGTCCTCGCGTTTGCGGCCGCGTTCGTCCTTGTTCTCGTCTGGTGG AGCACGATCGAGCCGCCGGCAAATGGAGCGTGGGCTCCGGACGTTGCTCGTCAGGTCACCGGCGAATTCGACGGTGATCT GTTGACGCTGACAAATGTCCGCGATTTCGAGTGGCGCAGTGCCACCGACTTCACGGAACGATGGACGACACGCAGTTACG ACCTGAACAAGCTGAAGAGCGTCGACATGTTCATGTCGTACTGGTCAGGTCCGACCATCGCGCATGTCATCATGAGCTTC GGCTTCGACGACGGCCGCTATCTGGCGTGGTCTATCGAGGTGCGTCGCCTTTCCGGAGGTTCGTTCTCACCGCTGGCGGA TCTTTTCAAAAACAGTCCTCTGGTCATCCTCGCCGCAGATGAAAGAGATGTGATCGGTCTCCGCTCCAATTTTCGCGGTG AGGACGTCCAGATCTATCGCCTGAGGGCGACGCCGGCGGCTGCGAGACTTCTTCTGCGCGAGTATGTCTCCGACGCAAAC AAGCTCGCGGCCACGCCCGCCTTCTACAATTCGCTGACGACCAACTGCACGACGACGATCGTCAAGATGATGCGCGTCGC AGGCGACGCCGTGCCGACGGACTGGCGCCTCGTCGTCAACGGATACCTGCCGGAATACGCCTATGACCGTGGCGCGCTGG ACATCTCCGTTCCCTTGTCGCAACTGCGGTCTGCCGCACACATCGCTGCAAGAGCGCACGACGACGGTGTTTCGCCGAAT TTCTCGCAGGCCATTCGCGTCGGCGTCCCGTCGCCGTTGGGCGCGTTGTGA
Upstream 100 bases:
>100_bases TCCGGAGACCCGTCGCTTCGGATAGATTCTGGGCTTCCAGTCCGGAAACCGATAGGGTCCACGACAGGACGGACGCTTCA AACTCGTTTGGAAATGCAAA
Downstream 100 bases:
>100_bases CGTATGCCGAAGCATTGAGCAAGCAAAACGGCTAGGCAGGCGCCACAATGCCTCCGGAGATTTTGACTACCATACGCCCC GCTTCGGGGCTTTTCGTATT
Product: putative transmembrane protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN FSQAIRVGVPSPLGAL
Sequences:
>Translated_336_residues MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN FSQAIRVGVPSPLGAL >Mature_336_residues MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGRRRFRAVLAFAAAFVLVLVWW STIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRSATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSF GFDDGRYLAWSIEVRRLSGGSFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLSQLRSAAHIAARAHDDGVSPN FSQAIRVGVPSPLGAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37145; Mature: 37145
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RRFRAVLAFAAAFVLVLVWWSTIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC ATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSFGFDDGRYLAWSIEVRRLSGG CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCC SFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN CCCHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLS HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCEEEECCHH QLRSAAHIAARAHDDGVSPNFSQAIRVGVPSPLGAL HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCC >Mature Secondary Structure MVRPVRAIVIAVLVLLVAFASAWSSLALWYRLPLPEVGRQASAILFGLLGAWVIVALFGR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH RRFRAVLAFAAAFVLVLVWWSTIEPPANGAWAPDVARQVTGEFDGDLLTLTNVRDFEWRS HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC ATDFTERWTTRSYDLNKLKSVDMFMSYWSGPTIAHVIMSFGFDDGRYLAWSIEVRRLSGG CCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEEEECCC SFSPLADLFKNSPLVILAADERDVIGLRSNFRGEDVQIYRLRATPAAARLLLREYVSDAN CCCHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHCCHH KLAATPAFYNSLTTNCTTTIVKMMRVAGDAVPTDWRLVVNGYLPEYAYDRGALDISVPLS HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHCCCCCEEEECCHH QLRSAAHIAARAHDDGVSPNFSQAIRVGVPSPLGAL HHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA