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The map label for this gene is ytbD [H]

Identifier: 116248838

GI number: 116248838

Start: 167491

End: 168753

Strand: Reverse

Name: ytbD [H]

Synonym: pRL120167

Alternate gene names: 116248838

Gene position: 168753-167491 (Counterclockwise)

Preceding gene: 116248840

Following gene: 116248837

Centisome position: 19.4

GC content: 62.31

Gene sequence:

>1263_bases
TTGCAACACAGCAATCGTTCAACCGGCAGCTCCGCTGTCTCAGCACCCTCACTCGAACCGTGGGGCGGAAAGGAACTTGT
CATGCCCTTAGCCATTTTTGCCTTGACGATCGCGGCCTACGCGATCGGCACCACCGAGTTCGTGATTGTCGGGCTTTTGC
CGACGGTTGCGACTGATCTGCACATTACCTTGTCGCTCGCCGGTTTGATCGTCAGCGTCTACGCGCTCGGCGTCACCTTC
GGCGCGCCCATACTCACCGCCTTGACCGGCAAGATCGAACGAAAGCCGCTGCTGCTTGGCCTGATGACCCTGTTCGTAAT
AGGCAACACCATTGCGGCGCTGTCGCCCAGCTATGAGATGCTGCTCGTTGCCCGCGTAATTGCCGCCTTCGCTCACGGCG
TCTTCTTTTCGGTCGGCGCAACGATCGCCGCCGACCTCGTGCCGGAAAACCGCCGCGCCTCGGCTATCGCCATGATGTTC
ATGGGCCTGACCGTCGCCATCGTCACCGGCGTTCCGATTGGCACATATATCGGCCAGATCTACGGTTGGCGTGCAACGTT
CTGGGCCGTTGCCGCTCTCGGTGTCATCGCCTTTGTCGCTATCGCCGCCCTTTTACCGAACACGCTGAAGAAGGCCCCGC
CGGCAAGCATTCTCGATCAGGTCCGCGTGCTCGGTTCTGGCCGCCTGCTCATCGTCTTCGCCATGACCGCGCTCGGTTAT
GGTGGCACCTTCGTCGCCTTTACCTTTCTTGCGCCGATCCTTCAGGACGTTACCGGCTTCTCCCAATCCAGTGTCAGCCT
GATCCTCGTGCTCTATGGCATCGCCATCGCGGCCGGCAACATCGGCGGCGGCAAGATTGCCAACCGTAATCCGGTCAAGG
CGCTGGTCGGCCTCTTCCTGGCTCAGGCAATCGTACTGCTGGTGTTTTCCTTCACCGCCGTCTCGCCGGTACTGACCCTG
ATCACGCTGGCGGCGCTCGGCTTCCTGTCCTTCGCCAATGTTCCGGGCCTGCAGCTCTATGTCGTGCAACTGGCCAAGGA
ACACCGTCCCGGCGCTGTCGATGTCGCCTCCGCGCTCAACATCGCGGCCTTCAATCTCGGCATCGCCATCGGCGCATGGC
TTGGTGGCCTGGTCGTCGAATCGCCGCTGGGTCTCGCTTCGACCCCTTGGATTGGCGCAATCCTGGTCGCCGTCGCCCTG
CTCCTGACCATCTGGAGCGGCGCCCTCGACCGCCGCGCATCCCCGTCCCTCAGGGTCGCGTGA

Upstream 100 bases:

>100_bases
ATTTCCCCTGTTCGGTTATCCATTGTCTTTCGCCTATGAAAGTAATTCACAGGTACTTATCCAATACTCCCGATTATCAT
TCAAGTTCTCTCCACCCATA

Downstream 100 bases:

>100_bases
CGCCTGCCAGGCCCGTCCTCATTATGATGACCTTCCTTTTCTTCCGGAGAAAATCAAGGAAAAGCAGCGTGCCGGTTGGG
ATTAACTTGGCCTTGTCACG

Product: MFS family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MQHSNRSTGSSAVSAPSLEPWGGKELVMPLAIFALTIAAYAIGTTEFVIVGLLPTVATDLHITLSLAGLIVSVYALGVTF
GAPILTALTGKIERKPLLLGLMTLFVIGNTIAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLVPENRRASAIAMMF
MGLTVAIVTGVPIGTYIGQIYGWRATFWAVAALGVIAFVAIAALLPNTLKKAPPASILDQVRVLGSGRLLIVFAMTALGY
GGTFVAFTFLAPILQDVTGFSQSSVSLILVLYGIAIAAGNIGGGKIANRNPVKALVGLFLAQAIVLLVFSFTAVSPVLTL
ITLAALGFLSFANVPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIAIGAWLGGLVVESPLGLASTPWIGAILVAVAL
LLTIWSGALDRRASPSLRVA

Sequences:

>Translated_420_residues
MQHSNRSTGSSAVSAPSLEPWGGKELVMPLAIFALTIAAYAIGTTEFVIVGLLPTVATDLHITLSLAGLIVSVYALGVTF
GAPILTALTGKIERKPLLLGLMTLFVIGNTIAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLVPENRRASAIAMMF
MGLTVAIVTGVPIGTYIGQIYGWRATFWAVAALGVIAFVAIAALLPNTLKKAPPASILDQVRVLGSGRLLIVFAMTALGY
GGTFVAFTFLAPILQDVTGFSQSSVSLILVLYGIAIAAGNIGGGKIANRNPVKALVGLFLAQAIVLLVFSFTAVSPVLTL
ITLAALGFLSFANVPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIAIGAWLGGLVVESPLGLASTPWIGAILVAVAL
LLTIWSGALDRRASPSLRVA
>Mature_420_residues
MQHSNRSTGSSAVSAPSLEPWGGKELVMPLAIFALTIAAYAIGTTEFVIVGLLPTVATDLHITLSLAGLIVSVYALGVTF
GAPILTALTGKIERKPLLLGLMTLFVIGNTIAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLVPENRRASAIAMMF
MGLTVAIVTGVPIGTYIGQIYGWRATFWAVAALGVIAFVAIAALLPNTLKKAPPASILDQVRVLGSGRLLIVFAMTALGY
GGTFVAFTFLAPILQDVTGFSQSSVSLILVLYGIAIAAGNIGGGKIANRNPVKALVGLFLAQAIVLLVFSFTAVSPVLTL
ITLAALGFLSFANVPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIAIGAWLGGLVVESPLGLASTPWIGAILVAVAL
LLTIWSGALDRRASPSLRVA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=375, Percent_Identity=39.4666666666667, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1786595, Length=364, Percent_Identity=32.4175824175824, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1787808, Length=391, Percent_Identity=31.7135549872123, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI145693198, Length=406, Percent_Identity=25.615763546798, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43297; Mature: 43297

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHSNRSTGSSAVSAPSLEPWGGKELVMPLAIFALTIAAYAIGTTEFVIVGLLPTVATDL
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
HITLSLAGLIVSVYALGVTFGAPILTALTGKIERKPLLLGLMTLFVIGNTIAALSPSYEM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
LLVARVIAAFAHGVFFSVGATIAADLVPENRRASAIAMMFMGLTVAIVTGVPIGTYIGQI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
YGWRATFWAVAALGVIAFVAIAALLPNTLKKAPPASILDQVRVLGSGRLLIVFAMTALGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHCC
GGTFVAFTFLAPILQDVTGFSQSSVSLILVLYGIAIAAGNIGGGKIANRNPVKALVGLFL
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
AQAIVLLVFSFTAVSPVLTLITLAALGFLSFANVPGLQLYVVQLAKEHRPGAVDVASALN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHH
IAAFNLGIAIGAWLGGLVVESPLGLASTPWIGAILVAVALLLTIWSGALDRRASPSLRVA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]