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The map label for this gene is ycjO [C]

Identifier: 116248683

GI number: 116248683

Start: 6726

End: 7664

Strand: Direct

Name: ycjO [C]

Synonym: pRL120007

Alternate gene names: 116248683

Gene position: 6726-7664 (Clockwise)

Preceding gene: 116248682

Following gene: 116248684

Centisome position: 0.77

GC content: 58.04

Gene sequence:

>939_bases
ATGGCCTCGACAAGCATCGAAACGGCCGCAGTGGCCAAGACGTCGAAAGGAAGGAGCAAACCGGATCGGTTTGCTCCCAA
CTACTGGCCTTTCGTTATCCCGGCGCTCATCGTCATTGCGGCCGTCATCGTTTTTCCATGGGTGTTTACGCTTTGGATGA
GCGTCAACAGCTGGACGCTCGGCCAGTCCCAGGTCTTTGCGGGATTGGACAACTATGCCCGGCTGGTCGTGGACATGCGC
TTCTGGGACTCGCTGTGGCATACGGTGCTCTACACGACGCTTTCCGTGGTGGTCCCACTTTTTCTAGGGACGCTCGCGGC
GCTGATCTTCGATGCTCAATTTCCGCTGCGCGGTCTTATACGCGGCATATTCGTGATGCCGATGATGGCCACACCCGTCG
CCATCGCTCTCGTCTGGACGATGATGTACCATCCGCAGCTCGGCGTACTCAACTATCTCCTCTCCTTCATCGGCATCGGC
CCGCAGGAGTGGATCTACAATCAGAGCAGCGTCATCCCGTCGCTGGTACTGGTGGAGACTTGGCAGTGGACGCCGCTTAT
CATGCTGATCGTGCTCGGCGGTCTGGCGGCGGTTCCGCGCGAGCCCTACGAAAGTGCTGAAATCGACGGAGCCAATGTCT
GGCAGAAATTCCGCTATCTGACGCTGCCGATGATCGCGCCGTTCCTGATGATTGCCGTGATCATCCGCAGCATCGATGCG
GTGAAGAGTTTCGACATCATCTATGCCATGACCCAAGGCGGTCCCGGCACGGCGTCGGAGACGATCAACATCTATCTCTA
TAACACCGCTTTCGCCTACTACGATATCGGCTATGGCTCGGCCATGGCGGTTGTCTTCTTCATCCTCATCGTCCTGCTCT
CCTTCGTCCTTATGATGCTCCGGCAGCGCGTGAACTGGTCCGACGGGGAGGCACGCTGA

Upstream 100 bases:

>100_bases
GTGTCGGTCTCACAAACATGATCGGCGGCGCCGATCCCGAAACCGAGCTGAAGGCAGCGACGGCACAGTTCGAACCCGTC
CTGGCGAAAAGCGAGGGATA

Downstream 100 bases:

>100_bases
TGAAGCGCAAGACGCTCGATCGCATCGGACTGCTGTTTGTTGCCCTGGTGATGATCTCGCCGGTCGTCCTGTTCTTCCTC
TGGATGATCTCGCTGTCGCT

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MASTSIETAAVAKTSKGRSKPDRFAPNYWPFVIPALIVIAAVIVFPWVFTLWMSVNSWTLGQSQVFAGLDNYARLVVDMR
FWDSLWHTVLYTTLSVVVPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFIGIG
PQEWIYNQSSVIPSLVLVETWQWTPLIMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMLRQRVNWSDGEAR

Sequences:

>Translated_312_residues
MASTSIETAAVAKTSKGRSKPDRFAPNYWPFVIPALIVIAAVIVFPWVFTLWMSVNSWTLGQSQVFAGLDNYARLVVDMR
FWDSLWHTVLYTTLSVVVPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFIGIG
PQEWIYNQSSVIPSLVLVETWQWTPLIMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMLRQRVNWSDGEAR
>Mature_311_residues
ASTSIETAAVAKTSKGRSKPDRFAPNYWPFVIPALIVIAAVIVFPWVFTLWMSVNSWTLGQSQVFAGLDNYARLVVDMRF
WDSLWHTVLYTTLSVVVPLFLGTLAALIFDAQFPLRGLIRGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFIGIGP
QEWIYNQSSVIPSLVLVETWQWTPLIMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDAV
KSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMMLRQRVNWSDGEAR

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=251, Percent_Identity=34.2629482071713, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789861, Length=273, Percent_Identity=28.9377289377289, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790465, Length=253, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34994; Mature: 34863

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCCCC
>Mature Secondary Structure 
ASTSIETAAVAKTSKGRSKPDRFAPNYWPFVIPALIVIAAVIVFPWVFTLWMSVNSWTL
CCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GQSQVFAGLDNYARLVVDMRFWDSLWHTVLYTTLSVVVPLFLGTLAALIFDAQFPLRGLI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RGIFVMPMMATPVAIALVWTMMYHPQLGVLNYLLSFIGIGPQEWIYNQSSVIPSLVLVET
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCCHHHCCHHHHHCC
WQWTPLIMLIVLGGLAAVPREPYESAEIDGANVWQKFRYLTLPMIAPFLMIAVIIRSIDA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKSFDIIYAMTQGGPGTASETINIYLYNTAFAYYDIGYGSAMAVVFFILIVLLSFVLMML
HHHHHHEEEEECCCCCCCCCEEEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
RQRVNWSDGEAR
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]