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The map label for this gene is ycjP [C]

Identifier: 116248684

GI number: 116248684

Start: 7664

End: 8479

Strand: Direct

Name: ycjP [C]

Synonym: pRL120008

Alternate gene names: 116248684

Gene position: 7664-8479 (Clockwise)

Preceding gene: 116248683

Following gene: 116248685

Centisome position: 0.88

GC content: 59.68

Gene sequence:

>816_bases
ATGAAGCGCAAGACGCTCGATCGCATCGGACTGCTGTTTGTTGCCCTGGTGATGATCTCGCCGGTCGTCCTGTTCTTCCT
CTGGATGATCTCGCTGTCGCTGAAATATGAGATCGACAACGGCGCCTATCCGCCGATCTTCATTCCGGAACGCTTCGCCT
GGTCGAACTATCTGAAGGTCTTCCAGGAGAACAACTTCTTCCTCTATCTCTGGAATTCGGTGCTGGTGACGGGTGCGGCC
ACGCTTCTGGCGCTGTTGATCGGCGTGCCGGCCGGATATGGCATCGCGCGCCTGAAGGCCGAGAAGTCTGCCATGGTCAT
TATGATCGCGCGCATGACGCCCGGCCTTTCCTTCCTGATCCCGCTCTTCCTGCTGTTTCAGTGGCTGAACCTGCTCGGCA
CGCTCATGCCGCAGATCATCATCCATCTCGTCGTCACCGTGCCGATCGTCGTGTGGATCATGATCGGTTATTTCGAGACG
ACGCCGATGGAGCTGGAGGAGGCTGCAAGCATCGACGGCGCAACACCCTGGCAGGTTTTCCGCCTGGTCGCCTTGCCGAT
CGCAAGGCCGGGCATCGTCGTCGCCTTCATCCTATCGGTCATCTTCTCGTGGAACAACTTCGTCTTCGGCATCGTGCTTG
CCAGCCGCGAGACGCGCACGCTTCCTGTCGCGGTCTACAACATGCTTTCGTTCGAGCAGGTCAGTTGGGGTCCGCTGGCG
GCGGCGGCGTTGATCGTCACCTTGCCCGTGCTGATATTGACGGTGTTTGCGCAACGGCAGATCGTGGCGGGCCTGACGGC
CGGAGCCGTCAAGTGA

Upstream 100 bases:

>100_bases
CGGCCATGGCGGTTGTCTTCTTCATCCTCATCGTCCTGCTCTCCTTCGTCCTTATGATGCTCCGGCAGCGCGTGAACTGG
TCCGACGGGGAGGCACGCTG

Downstream 100 bases:

>100_bases
GCGGGTGAGACAACGGTTTTGACGACTTCTGCTGCCTTCGGCCCACCTCCCGGTCGGGAGCGCCGCGTTTTGTGTGTCGG
CGCGGCGGTTATGGACACCC

Product: putative permease component of ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKRKTLDRIGLLFVALVMISPVVLFFLWMISLSLKYEIDNGAYPPIFIPERFAWSNYLKVFQENNFFLYLWNSVLVTGAA
TLLALLIGVPAGYGIARLKAEKSAMVIMIARMTPGLSFLIPLFLLFQWLNLLGTLMPQIIIHLVVTVPIVVWIMIGYFET
TPMELEEAASIDGATPWQVFRLVALPIARPGIVVAFILSVIFSWNNFVFGIVLASRETRTLPVAVYNMLSFEQVSWGPLA
AAALIVTLPVLILTVFAQRQIVAGLTAGAVK

Sequences:

>Translated_271_residues
MKRKTLDRIGLLFVALVMISPVVLFFLWMISLSLKYEIDNGAYPPIFIPERFAWSNYLKVFQENNFFLYLWNSVLVTGAA
TLLALLIGVPAGYGIARLKAEKSAMVIMIARMTPGLSFLIPLFLLFQWLNLLGTLMPQIIIHLVVTVPIVVWIMIGYFET
TPMELEEAASIDGATPWQVFRLVALPIARPGIVVAFILSVIFSWNNFVFGIVLASRETRTLPVAVYNMLSFEQVSWGPLA
AAALIVTLPVLILTVFAQRQIVAGLTAGAVK
>Mature_271_residues
MKRKTLDRIGLLFVALVMISPVVLFFLWMISLSLKYEIDNGAYPPIFIPERFAWSNYLKVFQENNFFLYLWNSVLVTGAA
TLLALLIGVPAGYGIARLKAEKSAMVIMIARMTPGLSFLIPLFLLFQWLNLLGTLMPQIIIHLVVTVPIVVWIMIGYFET
TPMELEEAASIDGATPWQVFRLVALPIARPGIVVAFILSVIFSWNNFVFGIVLASRETRTLPVAVYNMLSFEQVSWGPLA
AAALIVTLPVLILTVFAQRQIVAGLTAGAVK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=31.294964028777, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1790464, Length=249, Percent_Identity=34.9397590361446, Blast_Score=120, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30135; Mature: 30135

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1 ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKTLDRIGLLFVALVMISPVVLFFLWMISLSLKYEIDNGAYPPIFIPERFAWSNYLKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHH
FQENNFFLYLWNSVLVTGAATLLALLIGVPAGYGIARLKAEKSAMVIMIARMTPGLSFLI
HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHH
PLFLLFQWLNLLGTLMPQIIIHLVVTVPIVVWIMIGYFETTPMELEEAASIDGATPWQVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHH
RLVALPIARPGIVVAFILSVIFSWNNFVFGIVLASRETRTLPVAVYNMLSFEQVSWGPLA
HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHH
AAALIVTLPVLILTVFAQRQIVAGLTAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKRKTLDRIGLLFVALVMISPVVLFFLWMISLSLKYEIDNGAYPPIFIPERFAWSNYLKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHH
FQENNFFLYLWNSVLVTGAATLLALLIGVPAGYGIARLKAEKSAMVIMIARMTPGLSFLI
HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEECCCCCHHHHH
PLFLLFQWLNLLGTLMPQIIIHLVVTVPIVVWIMIGYFETTPMELEEAASIDGATPWQVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHH
RLVALPIARPGIVVAFILSVIFSWNNFVFGIVLASRETRTLPVAVYNMLSFEQVSWGPLA
HHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHH
AAALIVTLPVLILTVFAQRQIVAGLTAGAVK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]