| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yjgI [H]
Identifier: 114800536
GI number: 114800536
Start: 1045839
End: 1046594
Strand: Direct
Name: yjgI [H]
Synonym: HNE_1036
Alternate gene names: 114800536
Gene position: 1045839-1046594 (Clockwise)
Preceding gene: 114800004
Following gene: 114798124
Centisome position: 28.23
GC content: 65.21
Gene sequence:
>756_bases ATGTCGACCAAATTGAAGGGCCAGGTGGCCCTCGTCACCGGGGGCTCGCGCGGTCTCGGCGCGGCCATTGCTGAGGCGCT GGCAGATCAGGGCGCCGATGTTGCGATCAGCTATGTCGCGTCGGCGGAAAAGGCCGAGGCGGTTGTCGAAAAGCTGAAAG CCAAAGGCGTCCGCGCGCTCGCCGTCCGCAGTGATCAGGCCGATACGGCCGCCGCCGGGCCGCTGGTGGATGCCGTTATG GCGCATTTCGGAAAGCTCGACATTCTGGTCAACAACGCGGCCATCGCGGTGCAGGGCAGAACGGTTGATGATCCTGAACT GGAGACCGAAGCCTATGACCGCCAGTGGCAGGTCAATGTGCTGGGCGCTGTGGCAACCACACGCGCCGCGTCCCGCAAGC TGACGGATGGCGGGCGCATCATCTTCATCGGGTCAGGTCTTGGCAGCAAGGTGCCGTTCGCTGGCGTCGCCGACTATTCG GGCACGAAGGCCGCCATCGCCGGCTATGCCAGGGGCGTTCAGCGCGATCTTGGTCCGCGCAACATCACCGTCAATGTCGT CCAGCCAGGCATCATGCGGACGGATATGAACGCGGCCGTTGCCGACCAGCTGCCTCCGGGATTGATGGAAGCCCATGCCA TCCAGCGGATCGCGACGGTGGAAGAGGTCGCCGCCGCGGTCACCTTCCTCGCCGGTCCGGATGCGGGCTACATCGCGGCG GGTGTTCTGGACATCTCCGGCGGTTTCCTCGCCTGA
Upstream 100 bases:
>100_bases GATACCATAACTGACGTTATAATAACAATCGTTATGAAAAAACAAAGCTGCTGCAATCCTTCAGGAAAGCAGCGTTTCAG AGATCACGGAAAGGATTTCC
Downstream 100 bases:
>100_bases GCGATAGCGGGCGCAATATTCGAGTCGGGATTCGGGGCGGGTGGCCAACATCCGCCCCGATCTGTTTCAGCCAGATCTGT TTCAGCCCAATCTGATTCAA
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSTKLKGQVALVTGGSRGLGAAIAEALADQGADVAISYVASAEKAEAVVEKLKAKGVRALAVRSDQADTAAAGPLVDAVM AHFGKLDILVNNAAIAVQGRTVDDPELETEAYDRQWQVNVLGAVATTRAASRKLTDGGRIIFIGSGLGSKVPFAGVADYS GTKAAIAGYARGVQRDLGPRNITVNVVQPGIMRTDMNAAVADQLPPGLMEAHAIQRIATVEEVAAAVTFLAGPDAGYIAA GVLDISGGFLA
Sequences:
>Translated_251_residues MSTKLKGQVALVTGGSRGLGAAIAEALADQGADVAISYVASAEKAEAVVEKLKAKGVRALAVRSDQADTAAAGPLVDAVM AHFGKLDILVNNAAIAVQGRTVDDPELETEAYDRQWQVNVLGAVATTRAASRKLTDGGRIIFIGSGLGSKVPFAGVADYS GTKAAIAGYARGVQRDLGPRNITVNVVQPGIMRTDMNAAVADQLPPGLMEAHAIQRIATVEEVAAAVTFLAGPDAGYIAA GVLDISGGFLA >Mature_250_residues STKLKGQVALVTGGSRGLGAAIAEALADQGADVAISYVASAEKAEAVVEKLKAKGVRALAVRSDQADTAAAGPLVDAVMA HFGKLDILVNNAAIAVQGRTVDDPELETEAYDRQWQVNVLGAVATTRAASRKLTDGGRIIFIGSGLGSKVPFAGVADYSG TKAAIAGYARGVQRDLGPRNITVNVVQPGIMRTDMNAAVADQLPPGLMEAHAIQRIATVEEVAAAVTFLAGPDAGYIAAG VLDISGGFLA
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI5031737, Length=238, Percent_Identity=30.2521008403361, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=32.3770491803279, Blast_Score=96, Evalue=4e-20, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=29.4354838709677, Blast_Score=92, Evalue=3e-19, Organism=Homo sapiens, GI15277342, Length=262, Percent_Identity=29.7709923664122, Blast_Score=88, Evalue=9e-18, Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=32.4742268041237, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI7705925, Length=260, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=25.6809338521401, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=26.4822134387352, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=26.6949152542373, Blast_Score=74, Evalue=8e-14, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=28.2945736434109, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=251, Percent_Identity=25.8964143426295, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI4758504, Length=212, Percent_Identity=30.6603773584906, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=29.2929292929293, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=30.2857142857143, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI4504505, Length=218, Percent_Identity=30.2752293577982, Blast_Score=68, Evalue=9e-12, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=39.5918367346939, Blast_Score=150, Evalue=5e-38, Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=36.5079365079365, Blast_Score=129, Evalue=1e-31, Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=32.2834645669291, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=31.6, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=28.0487804878049, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=31.6602316602317, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1789208, Length=265, Percent_Identity=29.811320754717, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=27.710843373494, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=29.4117647058824, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=27.6, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=29.4573643410853, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=27.2373540856031, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1787820, Length=191, Percent_Identity=28.2722513089005, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=33.852140077821, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=28.4584980237154, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=31.640625, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17555706, Length=259, Percent_Identity=29.7297297297297, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=27.843137254902, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI193204405, Length=246, Percent_Identity=32.9268292682927, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562908, Length=217, Percent_Identity=33.6405529953917, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17565030, Length=220, Percent_Identity=34.5454545454545, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17562906, Length=220, Percent_Identity=33.6363636363636, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=28.3464566929134, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=29.7959183673469, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=31.4606741573034, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17559104, Length=211, Percent_Identity=35.0710900473934, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=26.6393442622951, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17531453, Length=247, Percent_Identity=29.9595141700405, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17568967, Length=221, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=26.4150943396226, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=35.4368932038835, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17560220, Length=215, Percent_Identity=31.6279069767442, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17560150, Length=243, Percent_Identity=27.9835390946502, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193203117, Length=242, Percent_Identity=28.5123966942149, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17563726, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=241, Percent_Identity=28.2157676348548, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17551412, Length=205, Percent_Identity=29.7560975609756, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI72000259, Length=242, Percent_Identity=26.8595041322314, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17562990, Length=242, Percent_Identity=28.099173553719, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538480, Length=207, Percent_Identity=28.5024154589372, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17562904, Length=254, Percent_Identity=26.3779527559055, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538182, Length=211, Percent_Identity=31.2796208530806, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=238, Percent_Identity=27.7310924369748, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71982365, Length=196, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=218, Percent_Identity=28.8990825688073, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6322861, Length=260, Percent_Identity=26.1538461538462, Blast_Score=70, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=226, Percent_Identity=24.7787610619469, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=27.1317829457364, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=33.9920948616601, Blast_Score=114, Evalue=6e-26, Organism=Drosophila melanogaster, GI21355319, Length=262, Percent_Identity=31.2977099236641, Blast_Score=97, Evalue=7e-21, Organism=Drosophila melanogaster, GI28571526, Length=253, Percent_Identity=30.8300395256917, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=31.0756972111554, Blast_Score=94, Evalue=9e-20, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=32.6693227091633, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=29.2490118577075, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=31.8897637795276, Blast_Score=91, Evalue=6e-19, Organism=Drosophila melanogaster, GI17737361, Length=236, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24644337, Length=172, Percent_Identity=33.7209302325581, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=30.1435406698565, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24580925, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=28.0334728033473, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI21355631, Length=173, Percent_Identity=30.635838150289, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=28.3582089552239, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25550; Mature: 25419
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKLKGQVALVTGGSRGLGAAIAEALADQGADVAISYVASAEKAEAVVEKLKAKGVRAL CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEE AVRSDQADTAAAGPLVDAVMAHFGKLDILVNNAAIAVQGRTVDDPELETEAYDRQWQVNV EEECCCCCCHHCCHHHHHHHHHCCCEEEEEECEEEEEECCCCCCCCCCHHHCCCEEEEEE LGAVATTRAASRKLTDGGRIIFIGSGLGSKVPFAGVADYSGTKAAIAGYARGVQRDLGPR EHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCC NITVNVVQPGIMRTDMNAAVADQLPPGLMEAHAIQRIATVEEVAAAVTFLAGPDAGYIAA CEEEEEECCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE GVLDISGGFLA EEEECCCCCCC >Mature Secondary Structure STKLKGQVALVTGGSRGLGAAIAEALADQGADVAISYVASAEKAEAVVEKLKAKGVRAL CCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCEEEE AVRSDQADTAAAGPLVDAVMAHFGKLDILVNNAAIAVQGRTVDDPELETEAYDRQWQVNV EEECCCCCCHHCCHHHHHHHHHCCCEEEEEECEEEEEECCCCCCCCCCHHHCCCEEEEEE LGAVATTRAASRKLTDGGRIIFIGSGLGSKVPFAGVADYSGTKAAIAGYARGVQRDLGPR EHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCC NITVNVVQPGIMRTDMNAAVADQLPPGLMEAHAIQRIATVEEVAAAVTFLAGPDAGYIAA CEEEEEECCCEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE GVLDISGGFLA EEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]