| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is 114800004
Identifier: 114800004
GI number: 114800004
Start: 1041587
End: 1042789
Strand: Direct
Name: 114800004
Synonym: HNE_1031
Alternate gene names: NA
Gene position: 1041587-1042789 (Clockwise)
Preceding gene: 114797928
Following gene: 114800536
Centisome position: 28.11
GC content: 63.26
Gene sequence:
>1203_bases ATGGCCGCCAGCGTACAGGGAAAGTGCGACCCCAAATTCGCAAAAGTCCGTGAAGAGTTCGAGCGCAACTTCGCCGCGCG CGGAGAAGTCGGCGCCTCGGTCTGCCTCTCGGTAGACGGTCAGGTCGCGGTCGATCTCTGGGGCGGCATGGCCAATCCGG AGACCAGCGATCCCTGGCAGGAAGACACGGTCTCCATCGTCTTCTCCTGCACCAAGGCCGCCGTCGCCACCTGCGCCCAC ATCCTGATCGATCAGGGCAAGCTCAATCCGAGCGCGCTGGTGAAGGATTACTGGCCGGAATTCGCCAAGGCCGGCAAAGA GAAAACCACCGTCCAGATGATGCTCAACCATGAGAGCGCGCTGCCCACCCTGCGCGACCAGGTAAAGCCCGGCGGCTTTG GCGACTGGGATTACATGATCAAACGGATGGAAGACGAGGAAGCCTTCTGGGAGCCGGGCACGCGCAACGGCTATCACATG GTCAATTTCGGCTGGACGGTCGGCGAACTTGTCCGCCGCGTCTCGGGCAAATCGCTCGGCACGTTCTTCCGCGAGGAAGT GGCGGAAAAAACCGGCGCAAAATTCTGGATCGGCCTGCCGGAAAGCGAAAACGTCCACATCGCCCCCATCCGCATGTATG AGCCAAAGCCCACCGATCAGCCTACGGAATTCACCATCGCGCTGATGGGCGACCCCAACTCTATCCAGCACAAATCCTTC CTCAACACCGGCGGGTGGGACTGGAACAACCGCCAGAACCAGGCCGCTGAAGTCGGCGGCGGCGGCGGGCTCTCCAATGC GCGCGGACAGGTCAAGTGGTATACGGAGCTTGCCACAAACAGTGGCAAACTCGTCTCGGCAGACCGCCTGGCCGCCATGG GCCGCGTCACTACCGCCACCCAGCGCGACGCAACCCTGCTCATCCCCTCGCGCTTTGCCTCGGGCTATATGAAATCCATG GACAATCGCGGCCTGAACCTTGGTCCCGGCACCAGCGCCATCATGGGCGAGGCGGCCTTCGGCCATGTTGGCGCCGGCGG CTCCATCGGCTTTGCAGACCCCGAAGCGGGCCTCGCTTTCAGCTACACCATGAACCAGATGGGCGGCGGCCTCCTGCTGA ATGAGCGCGGTCAGAGCCTCATCGACGCGGCCTATCAGGCGCTCGGCTACCGCACCAACGCGCCGGGGTCCTGGGTGCGC TAA
Upstream 100 bases:
>100_bases TCCCATCCGGGGCGGCCCTTTTGCTTTCCCCACCGTAACCACTCCCCAATCCTTCCAAACCCGCTAACCTCGCCGCAAAA GAACCTCGGGAGGAAATCAG
Downstream 100 bases:
>100_bases AGGTCGCCCGGCGGCGGCGCCCGGTCTGTTGGTATAAGGACCATGAACACCGTCGCCGCCACGGCCGCCAGCGCAACGCC GATCACAAGCGGCTGAGAAA
Product: putative esterase
Products: NA
Alternate protein names: Esterase; Carboxylesterase; Beta-Lactamase Class C; Esterase/Lipase LipP; Esterase A; Esterase/Lipase/Beta-Lactamase; Lactone Hydrolase; Lipase LipE; Beta-Lactamase Protein; Esterase LipL; Lipase LipD; Lipase/Esterase/Beta-Lactamase; Beta-Lactamase Family Protein; Beta-Lactamase-Like Protein; Esterase/Lipase; Carboxylesterase EstC; Serine Hydrolase; Beta-Lactamase Family
Number of amino acids: Translated: 400; Mature: 399
Protein sequence:
>400_residues MAASVQGKCDPKFAKVREEFERNFAARGEVGASVCLSVDGQVAVDLWGGMANPETSDPWQEDTVSIVFSCTKAAVATCAH ILIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESALPTLRDQVKPGGFGDWDYMIKRMEDEEAFWEPGTRNGYHM VNFGWTVGELVRRVSGKSLGTFFREEVAEKTGAKFWIGLPESENVHIAPIRMYEPKPTDQPTEFTIALMGDPNSIQHKSF LNTGGWDWNNRQNQAAEVGGGGGLSNARGQVKWYTELATNSGKLVSADRLAAMGRVTTATQRDATLLIPSRFASGYMKSM DNRGLNLGPGTSAIMGEAAFGHVGAGGSIGFADPEAGLAFSYTMNQMGGGLLLNERGQSLIDAAYQALGYRTNAPGSWVR
Sequences:
>Translated_400_residues MAASVQGKCDPKFAKVREEFERNFAARGEVGASVCLSVDGQVAVDLWGGMANPETSDPWQEDTVSIVFSCTKAAVATCAH ILIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESALPTLRDQVKPGGFGDWDYMIKRMEDEEAFWEPGTRNGYHM VNFGWTVGELVRRVSGKSLGTFFREEVAEKTGAKFWIGLPESENVHIAPIRMYEPKPTDQPTEFTIALMGDPNSIQHKSF LNTGGWDWNNRQNQAAEVGGGGGLSNARGQVKWYTELATNSGKLVSADRLAAMGRVTTATQRDATLLIPSRFASGYMKSM DNRGLNLGPGTSAIMGEAAFGHVGAGGSIGFADPEAGLAFSYTMNQMGGGLLLNERGQSLIDAAYQALGYRTNAPGSWVR >Mature_399_residues AASVQGKCDPKFAKVREEFERNFAARGEVGASVCLSVDGQVAVDLWGGMANPETSDPWQEDTVSIVFSCTKAAVATCAHI LIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESALPTLRDQVKPGGFGDWDYMIKRMEDEEAFWEPGTRNGYHMV NFGWTVGELVRRVSGKSLGTFFREEVAEKTGAKFWIGLPESENVHIAPIRMYEPKPTDQPTEFTIALMGDPNSIQHKSFL NTGGWDWNNRQNQAAEVGGGGGLSNARGQVKWYTELATNSGKLVSADRLAAMGRVTTATQRDATLLIPSRFASGYMKSMD NRGLNLGPGTSAIMGEAAFGHVGAGGSIGFADPEAGLAFSYTMNQMGGGLLLNERGQSLIDAAYQALGYRTNAPGSWVR
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Caenorhabditis elegans, GI17538001, Length=401, Percent_Identity=30.1745635910224, Blast_Score=167, Evalue=1e-41, Organism=Caenorhabditis elegans, GI17535191, Length=386, Percent_Identity=30.0518134715026, Blast_Score=160, Evalue=1e-39, Organism=Caenorhabditis elegans, GI71983659, Length=382, Percent_Identity=30.1047120418848, Blast_Score=155, Evalue=3e-38, Organism=Caenorhabditis elegans, GI71983666, Length=210, Percent_Identity=38.0952380952381, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17538474, Length=411, Percent_Identity=27.7372262773723, Blast_Score=148, Evalue=4e-36, Organism=Caenorhabditis elegans, GI17535177, Length=390, Percent_Identity=29.4871794871795, Blast_Score=144, Evalue=8e-35, Organism=Caenorhabditis elegans, GI71990590, Length=386, Percent_Identity=25.3886010362694, Blast_Score=101, Evalue=7e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43369; Mature: 43238
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASVQGKCDPKFAKVREEFERNFAARGEVGASVCLSVDGQVAVDLWGGMANPETSDPWQ CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCC EDTVSIVFSCTKAAVATCAHILIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC LPTLRDQVKPGGFGDWDYMIKRMEDEEAFWEPGTRNGYHMVNFGWTVGELVRRVSGKSLG CCHHHHHCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH TFFREEVAEKTGAKFWIGLPESENVHIAPIRMYEPKPTDQPTEFTIALMGDPNSIQHKSF HHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHH LNTGGWDWNNRQNQAAEVGGGGGLSNARGQVKWYTELATNSGKLVSADRLAAMGRVTTAT CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHCCCEECC QRDATLLIPSRFASGYMKSMDNRGLNLGPGTSAIMGEAAFGHVGAGGSIGFADPEAGLAF CCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCEEE SYTMNQMGGGLLLNERGQSLIDAAYQALGYRTNAPGSWVR EEEHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AASVQGKCDPKFAKVREEFERNFAARGEVGASVCLSVDGQVAVDLWGGMANPETSDPWQ CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCC EDTVSIVFSCTKAAVATCAHILIDQGKLNPSALVKDYWPEFAKAGKEKTTVQMMLNHESA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC LPTLRDQVKPGGFGDWDYMIKRMEDEEAFWEPGTRNGYHMVNFGWTVGELVRRVSGKSLG CCHHHHHCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCEEEEEECCCHHHHHHHHCCCHHH TFFREEVAEKTGAKFWIGLPESENVHIAPIRMYEPKPTDQPTEFTIALMGDPNSIQHKSF HHHHHHHHHHCCCEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHH LNTGGWDWNNRQNQAAEVGGGGGLSNARGQVKWYTELATNSGKLVSADRLAAMGRVTTAT CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCCCCCEEEHHHHHHHCCCEECC QRDATLLIPSRFASGYMKSMDNRGLNLGPGTSAIMGEAAFGHVGAGGSIGFADPEAGLAF CCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHCCHHCCCCCCCCCCCCCCCCCCEEE SYTMNQMGGGLLLNERGQSLIDAAYQALGYRTNAPGSWVR EEEHHHCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA