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The map label for this gene is ybaO [H]

Identifier: 114800525

GI number: 114800525

Start: 2739752

End: 2740234

Strand: Direct

Name: ybaO [H]

Synonym: HNE_2585

Alternate gene names: 114800525

Gene position: 2739752-2740234 (Clockwise)

Preceding gene: 114797929

Following gene: 114798416

Centisome position: 73.95

GC content: 53.21

Gene sequence:

>483_bases
ATGAGCGAAGAACTTTCGATATTTGATATCAAGATCCTTGAGCAACTCCAGAAGGATTGCTCGGTGTCGACCGTTGAGTT
GGCGGATATTGTCGGCCTGTCCCAGTCGCCCTGCTGGCGCCGCCTGCAAAGGCTGAAGGATGACGGCTATATCCGGCAAC
AAGTCGCCATTCTGGACCGGGAGAAACTCGGCTACGGGCTCCACATCTTTGCCTATGTAAAGGTGGCGCGCCTTTCGGAG
AAAGACCGCGAGGTATTCCTGCGCAAAGTTCAGAATACGCCGGAGATTCTCGAATGCTATTCCATCTTTGGCGAGATGGA
CCTGATGATGAAGATCCTCGCCAAATCCATGAAATGGTATCAGGAATTCCTGATGGACTTCCTTCTGAACCTTCCGGGTG
TGGAGAATGTCAACTCTACGGCAACGCTAGGCGAATTGAAATCGACCACCGCCATCCCCGTGCGCGGCAACATCGCGCTC
TGA

Upstream 100 bases:

>100_bases
TTGAGGCAGCCAGACCTGGCGCAGCATAGTTTCTGAGGCCACGCGCCAATATCGGCATGCACAATGTTGTGTTTCTCGAA
ACACAAGTTATTCTATCGCG

Downstream 100 bases:

>100_bases
GGTGAGATTACGGTCTGCTTACGGATTTTCCGCGTAGGCCATGCATTCCACTTCTACAGATGCACCAAGCGCCAGGCCAT
CGGCGCCGAAAGCGCTGCGC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSEELSIFDIKILEQLQKDCSVSTVELADIVGLSQSPCWRRLQRLKDDGYIRQQVAILDREKLGYGLHIFAYVKVARLSE
KDREVFLRKVQNTPEILECYSIFGEMDLMMKILAKSMKWYQEFLMDFLLNLPGVENVNSTATLGELKSTTAIPVRGNIAL

Sequences:

>Translated_160_residues
MSEELSIFDIKILEQLQKDCSVSTVELADIVGLSQSPCWRRLQRLKDDGYIRQQVAILDREKLGYGLHIFAYVKVARLSE
KDREVFLRKVQNTPEILECYSIFGEMDLMMKILAKSMKWYQEFLMDFLLNLPGVENVNSTATLGELKSTTAIPVRGNIAL
>Mature_159_residues
SEELSIFDIKILEQLQKDCSVSTVELADIVGLSQSPCWRRLQRLKDDGYIRQQVAILDREKLGYGLHIFAYVKVARLSEK
DREVFLRKVQNTPEILECYSIFGEMDLMMKILAKSMKWYQEFLMDFLLNLPGVENVNSTATLGELKSTTAIPVRGNIAL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=38, Blast_Score=114, Evalue=3e-27,
Organism=Escherichia coli, GI1787116, Length=154, Percent_Identity=33.1168831168831, Blast_Score=92, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18365; Mature: 18234

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEELSIFDIKILEQLQKDCSVSTVELADIVGLSQSPCWRRLQRLKDDGYIRQQVAILDR
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
EKLGYGLHIFAYVKVARLSEKDREVFLRKVQNTPEILECYSIFGEMDLMMKILAKSMKWY
HHCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEFLMDFLLNLPGVENVNSTATLGELKSTTAIPVRGNIAL
HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SEELSIFDIKILEQLQKDCSVSTVELADIVGLSQSPCWRRLQRLKDDGYIRQQVAILDR
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
EKLGYGLHIFAYVKVARLSEKDREVFLRKVQNTPEILECYSIFGEMDLMMKILAKSMKWY
HHCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
QEFLMDFLLNLPGVENVNSTATLGELKSTTAIPVRGNIAL
HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]