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The map label for this gene is yddU [C]

Identifier: 114797929

GI number: 114797929

Start: 2737386

End: 2739632

Strand: Direct

Name: yddU [C]

Synonym: HNE_2584

Alternate gene names: 114797929

Gene position: 2737386-2739632 (Clockwise)

Preceding gene: 114798784

Following gene: 114800525

Centisome position: 73.88

GC content: 59.28

Gene sequence:

>2247_bases
ATGCCCATTAGGAGCTGGGTCAGCGCCTCCCTCAGGCGGAAGCTTACGGTTATATACTCAGCCCTCTTCGGGCTGATCCT
TCTGCTTGTGGCAGGCGCCGTATATCTCAGCATCAAGATCAATGCCGAGCGCACGGTGGAGCGCGAGCTGGCAGCGAGCG
TTGCGATCTTCGAGCGCCTCTGGAACATGTCCAGCGAGAATATGACGGCGCGCGCCGAAGTGCTTGCTTCTGATTACGGT
TTCCGCGAAGCGGTTGCCACAGAAGACTACCCCACCATCGCGTCTGCCATCGGCAATGTCAGCGCGCGCGCCGAAGGGCT
CAATGCCATCGTCGCGTTCCCTGACGGGCGCTATGTTTCTCCAGACGGCACGGAGGGCTCCCTCCCCGACGACATGCTCG
AAGCCATGTTCACCATGGGCAAAACCAGCGGTGTGGTGACCCATGAAGGTGCCAACTTCCAGTCAGTCGCTGTGCCGATT
GAGGCGCCCGTGCTTGTTGGGTGGGCCGTATTCTGGTCCGATCTCGATGAAGCCCGAATGCATGCGCTGGAAGAACTCTC
GCCTATTCCGGTGAAGGCTGAAATCCGCCGGAGCGCAGAGTGGGACGGCGAGGACGGAGAGATTCACAAAACCCGCGGCT
GGATCGGTGCGTCCCGCCACATCCGGAATTTCGGCGCGGGCGAGCAGATGAGCCTCGTCATCACCTATCCTTTGCAGGCC
GCCATGGCGCCCTACCGGCCAATGATGTGGGCCATCATCAGTTTCAGCATCTTTGGTGCGGGCCTCCTTGTGGTTTCCGG
CGGGTTGGTTGCCCGCTCGTTGACACAGCCCATCGCGACCCTAGATGAAGCCGTTCACGCCCTTGCAGCCGGCAACCGCC
AGCCAGTTGCCGTGACTGGAAAAGACGAATTCGGCCGGCTCGCCAGCAGTTTCAACATGATGCTGGAAGACCTGGAAGCA
CGCGAGGCCGCCATTGTCACGCTTTCTCGCGAAGACATGGAAACCGGATTGCCAAACCGGCGCGCGATGAACGATGACAT
TGACGCGCGGGGGGGAGACGTTGCGGTCCGTATTGCGGTCATACGTGTACTGCGTTTCCGTAAAGTACGCGCGTCCATTG
GTCATGCCGCTACGGCCCAGGCGATGAAAATCCTTGCGGGACGCATTCAGGAATTCACAGGCGCGCTGCCTTACCGGATC
AACGGCGCCGATCTCGGCCTGATCTTCGAGCCTGGCAGCCGCTTTGCGACGCCCGAGGCCTTGACGCATATCGTGGGCGC
CTGCTCGCAACCGGTCATGATCGAGGATGCATCCGTTGACCTGATGCTGTGCAGCGGACTGGCGATCCCCGACGCTGCGG
AAGTGCGCCCGCTTGGGCTGATCGACCAGGCCGTTATCGCTGCGGATATGGCGGAAGCCAATCAAGCCCCTTCCGCAGCC
TTCGACCTTGCCAGATATGGCAACCCCGCAAGCACGCTCTCTCTGATGAGCGAAATGCTCAAAGCCACCCGCGACGGCGG
CTTGTCACTTCATTATCAGCCGAAATTCAGCCTGAAGACGAACACTGTCTGTGGCCTTGAAGCGCTGATCCGCTGGGATC
ACCCTCAGCAGGGACGCATTTATCCCGACACGTTCATTCCGCTTGCGGAAGAGACAGGCCATATACGGCAGCTTACCGAA
TGGGTGGTCATCCAGGCCATTGAAGACCAACGCGCGTTGCGTCAAAACGGCTACGAATTGCCCATTTCGGTGAATATCTC
CGGCCGCCAGCTGAATGAAGACAGCTTTGCACTTTGGGCCATCGGCAAGATCCGCAGTTCGGGCGCCAAACTCTGTTTCG
AGATTACCGAAACCGCCGTGATCAGCGATCCCGACAAAGCCTTGCGGTTAATCAATCTGTTCCGGGCCGCCGGGATCTCG
ATTTCGATTGATGACTATGGCGCGGGCCTGTCTTCTCTCTCCTATCTGAAACAGATCCCGGCGCACGAATTGAAGATCGA
CAAATCCTTTATCCTCACGGTGGAGGACGGGAAATCCGATCAGCTGATGATCCAGTCCACCATCGATCTCGCCCATGCCA
TGGGCATGTCCGTCGTGGCAGAAGGCGTGGAAAACGAACGCGTTGTCGAGTTACTCCGGGCAATGGGCGCCGATACGGTT
CAGGGCTATCATATCTCGCGTCCCCTGACTTTGGAGACGACGCTCAGCTTCCTGCGCGCACAAAATCCTCAGCGCGACAT
CGCCTGA

Upstream 100 bases:

>100_bases
GTCTGGCATCCCGATGCGATGGGCCGCGAGACCAGCGTAGACGCCCCCGCAGCAGCAGCTGCGCCCATTGCCGTGACCCT
GAAGATGAAACCGAAAGCTC

Downstream 100 bases:

>100_bases
AATGTGTCGTTGCCCGAATTTGAGGCAGCCAGACCTGGCGCAGCATAGTTTCTGAGGCCACGCGCCAATATCGGCATGCA
CAATGTTGTGTTTCTCGAAA

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 748; Mature: 747

Protein sequence:

>748_residues
MPIRSWVSASLRRKLTVIYSALFGLILLLVAGAVYLSIKINAERTVERELAASVAIFERLWNMSSENMTARAEVLASDYG
FREAVATEDYPTIASAIGNVSARAEGLNAIVAFPDGRYVSPDGTEGSLPDDMLEAMFTMGKTSGVVTHEGANFQSVAVPI
EAPVLVGWAVFWSDLDEARMHALEELSPIPVKAEIRRSAEWDGEDGEIHKTRGWIGASRHIRNFGAGEQMSLVITYPLQA
AMAPYRPMMWAIISFSIFGAGLLVVSGGLVARSLTQPIATLDEAVHALAAGNRQPVAVTGKDEFGRLASSFNMMLEDLEA
REAAIVTLSREDMETGLPNRRAMNDDIDARGGDVAVRIAVIRVLRFRKVRASIGHAATAQAMKILAGRIQEFTGALPYRI
NGADLGLIFEPGSRFATPEALTHIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAA
FDLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRIYPDTFIPLAEETGHIRQLTE
WVVIQAIEDQRALRQNGYELPISVNISGRQLNEDSFALWAIGKIRSSGAKLCFEITETAVISDPDKALRLINLFRAAGIS
ISIDDYGAGLSSLSYLKQIPAHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMGADTV
QGYHISRPLTLETTLSFLRAQNPQRDIA

Sequences:

>Translated_748_residues
MPIRSWVSASLRRKLTVIYSALFGLILLLVAGAVYLSIKINAERTVERELAASVAIFERLWNMSSENMTARAEVLASDYG
FREAVATEDYPTIASAIGNVSARAEGLNAIVAFPDGRYVSPDGTEGSLPDDMLEAMFTMGKTSGVVTHEGANFQSVAVPI
EAPVLVGWAVFWSDLDEARMHALEELSPIPVKAEIRRSAEWDGEDGEIHKTRGWIGASRHIRNFGAGEQMSLVITYPLQA
AMAPYRPMMWAIISFSIFGAGLLVVSGGLVARSLTQPIATLDEAVHALAAGNRQPVAVTGKDEFGRLASSFNMMLEDLEA
REAAIVTLSREDMETGLPNRRAMNDDIDARGGDVAVRIAVIRVLRFRKVRASIGHAATAQAMKILAGRIQEFTGALPYRI
NGADLGLIFEPGSRFATPEALTHIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAA
FDLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRIYPDTFIPLAEETGHIRQLTE
WVVIQAIEDQRALRQNGYELPISVNISGRQLNEDSFALWAIGKIRSSGAKLCFEITETAVISDPDKALRLINLFRAAGIS
ISIDDYGAGLSSLSYLKQIPAHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMGADTV
QGYHISRPLTLETTLSFLRAQNPQRDIA
>Mature_747_residues
PIRSWVSASLRRKLTVIYSALFGLILLLVAGAVYLSIKINAERTVERELAASVAIFERLWNMSSENMTARAEVLASDYGF
REAVATEDYPTIASAIGNVSARAEGLNAIVAFPDGRYVSPDGTEGSLPDDMLEAMFTMGKTSGVVTHEGANFQSVAVPIE
APVLVGWAVFWSDLDEARMHALEELSPIPVKAEIRRSAEWDGEDGEIHKTRGWIGASRHIRNFGAGEQMSLVITYPLQAA
MAPYRPMMWAIISFSIFGAGLLVVSGGLVARSLTQPIATLDEAVHALAAGNRQPVAVTGKDEFGRLASSFNMMLEDLEAR
EAAIVTLSREDMETGLPNRRAMNDDIDARGGDVAVRIAVIRVLRFRKVRASIGHAATAQAMKILAGRIQEFTGALPYRIN
GADLGLIFEPGSRFATPEALTHIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAAF
DLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRIYPDTFIPLAEETGHIRQLTEW
VVIQAIEDQRALRQNGYELPISVNISGRQLNEDSFALWAIGKIRSSGAKLCFEITETAVISDPDKALRLINLFRAAGISI
SIDDYGAGLSSLSYLKQIPAHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMGADTVQ
GYHISRPLTLETTLSFLRAQNPQRDIA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=433, Percent_Identity=30.0230946882217, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI1787541, Length=444, Percent_Identity=28.3783783783784, Blast_Score=155, Evalue=1e-38,
Organism=Escherichia coli, GI1790496, Length=261, Percent_Identity=32.9501915708812, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=31.8007662835249, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=30.6201550387597, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=224, Percent_Identity=32.5892857142857, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=32.3651452282158, Blast_Score=116, Evalue=6e-27,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=32.8125, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI1787055, Length=232, Percent_Identity=33.6206896551724, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87081980, Length=245, Percent_Identity=30.2040816326531, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788849, Length=250, Percent_Identity=28.8, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI87082096, Length=253, Percent_Identity=26.8774703557312, Blast_Score=86, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 81191; Mature: 81060

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRSWVSASLRRKLTVIYSALFGLILLLVAGAVYLSIKINAERTVERELAASVAIFERL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHH
WNMSSENMTARAEVLASDYGFREAVATEDYPTIASAIGNVSARAEGLNAIVAFPDGRYVS
HCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCHHHCCCCEEEEECCCCCEEC
PDGTEGSLPDDMLEAMFTMGKTSGVVTHEGANFQSVAVPIEAPVLVGWAVFWSDLDEARM
CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHCHHHHHH
HALEELSPIPVKAEIRRSAEWDGEDGEIHKTRGWIGASRHIRNFGAGEQMSLVITYPLQA
HHHHHCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCEEEEEEECHHH
AMAPYRPMMWAIISFSIFGAGLLVVSGGLVARSLTQPIATLDEAVHALAAGNRQPVAVTG
HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
KDEFGRLASSFNMMLEDLEAREAAIVTLSREDMETGLPNRRAMNDDIDARGGDVAVRIAV
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
IRVLRFRKVRASIGHAATAQAMKILAGRIQEFTGALPYRINGADLGLIFEPGSRFATPEA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCCHHH
LTHIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAA
HHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
FDLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRI
HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCC
YPDTFIPLAEETGHIRQLTEWVVIQAIEDQRALRQNGYELPISVNISGRQLNEDSFALWA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECCCCEEEEE
IGKIRSSGAKLCFEITETAVISDPDKALRLINLFRAAGISISIDDYGAGLSSLSYLKQIP
EHHHHCCCCCEEEEEHHHHEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC
AHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMGADTV
CHHEEECCEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
QGYHISRPLTLETTLSFLRAQNPQRDIA
CCEECCCCEEHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PIRSWVSASLRRKLTVIYSALFGLILLLVAGAVYLSIKINAERTVERELAASVAIFERL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHH
WNMSSENMTARAEVLASDYGFREAVATEDYPTIASAIGNVSARAEGLNAIVAFPDGRYVS
HCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCHHHCCCCEEEEECCCCCEEC
PDGTEGSLPDDMLEAMFTMGKTSGVVTHEGANFQSVAVPIEAPVLVGWAVFWSDLDEARM
CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHCHHHHHH
HALEELSPIPVKAEIRRSAEWDGEDGEIHKTRGWIGASRHIRNFGAGEQMSLVITYPLQA
HHHHHCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCEEEEEEECHHH
AMAPYRPMMWAIISFSIFGAGLLVVSGGLVARSLTQPIATLDEAVHALAAGNRQPVAVTG
HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
KDEFGRLASSFNMMLEDLEAREAAIVTLSREDMETGLPNRRAMNDDIDARGGDVAVRIAV
CHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
IRVLRFRKVRASIGHAATAQAMKILAGRIQEFTGALPYRINGADLGLIFEPGSRFATPEA
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCCHHH
LTHIVGACSQPVMIEDASVDLMLCSGLAIPDAAEVRPLGLIDQAVIAADMAEANQAPSAA
HHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
FDLARYGNPASTLSLMSEMLKATRDGGLSLHYQPKFSLKTNTVCGLEALIRWDHPQQGRI
HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCC
YPDTFIPLAEETGHIRQLTEWVVIQAIEDQRALRQNGYELPISVNISGRQLNEDSFALWA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCEECCCCEEEEE
IGKIRSSGAKLCFEITETAVISDPDKALRLINLFRAAGISISIDDYGAGLSSLSYLKQIP
EHHHHCCCCCEEEEEHHHHEECCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC
AHELKIDKSFILTVEDGKSDQLMIQSTIDLAHAMGMSVVAEGVENERVVELLRAMGADTV
CHHEEECCEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
QGYHISRPLTLETTLSFLRAQNPQRDIA
CCEECCCCEEHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]