| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is aceB [H]
Identifier: 114800327
GI number: 114800327
Start: 1258427
End: 1260064
Strand: Direct
Name: aceB [H]
Synonym: HNE_1238
Alternate gene names: 114800327
Gene position: 1258427-1260064 (Clockwise)
Preceding gene: 114800503
Following gene: 114797791
Centisome position: 33.97
GC content: 62.33
Gene sequence:
>1638_bases ATGTCCACCACAGCCACACTTGAACACCCCTCCGCCACCCGCGCGAAGATCGAAGTGAAGGGCAAGGCCGCCGGTGTCGA GCGCGTGCTGACGCCCCAGGCGCTGGCGTTCATTGAGGCGCTGGAGCGCCGCTTCGGCGCCCGCCGCCGCGAATTGCTCA GCCTGCGGAAAGAGCGCCAGGCGCGGTTCGATGCCGGTGAACTGCCCGATTTTCTCCCCGAGACGAAATCCATTCGGAAC GGCCATTGGGAAGTTGATCCTGTGCCGTCCGTCCTTCTGGACCGCTCGGTCGAGATCACCGGCCCGGTGGACCGCAAGAT GATGATCAACGCGCTGAACTCCGGCGCCAAGATGTTCATGGCAGACTTTGAAGACGCCTCCTCGCCGACCTTTGCCAACA TGATCGACGGCCAGGTCAACATGCAGGACTTTGCCCGCGGCAAGCTCGCCTACACCGACGCGGGCTCGGGCAAATCCTAC GCGCTGAATGACAAGGTTGCGGTCATGATCGTGCGCCCGCGCGGCTGGCATATGGAAGAAGCCCACATCTTCGTCGATGG CCGGCCCATCTCCGCCAGCCTCTTCGATTTCGGCCTGCACTTCTATCACAATGGAAAGATGCTGTTCGAGGCCGGTATCG GCCCGTTTTATTACCTCCCCAAGATGGAGAGCCATCTGGAAGCCCGCCTTTGGGACGAGGTGTTTGAATACGCACAAGGC GAAATCGGCATCCCGACGGGCTCCATCAAGGCAACCGTCCTTATCGAGACATTGCCAGCCGCCTTCGAGATGGACGAGAT CCTCTATGAACTGCGCCGTCACATCGCCGGTCTCAATTGCGGCCGCTGGGATTACATCTTCTCCTATATCAAGACGCTGC GGAATCATGCGGACTTCGTCCTGCCGGACCGCGCGCAGGTCGGCATGGACCGCGCCTTCCTCAACGCCTATTCGCTGCTC CTCATCAAGACCTGCCACCGCCGCCGCGCCCACGCCATGGGCGGCATGGCCGCGCAGATCCCGGTGAAGAATGACGAGGC CGCCAATGACGCCGCCTTCGCCAAGGTGCGCGCCGACAAGCTCCGTGAAGTGAAGAATGGCCATGACGGCACATGGGTTG CCCACCCCGCGCTCGTGCCCGTCGCGCTGGAAGTTTTCAACGAGCATATGGCGCTCGGCAATCAGGTCCTCAGCCAGCGT TGCTTCCCGCCTATCAATCAGTCTGCCCTGCTGAAGCCCCACACCGGTGAGATCACAGAAGCCGGTGTGCGCACGAACGT GTCCGTCGGCATCGAATACACCGCCGCCTGGCTCAATGGCCGCGGCGCCGTGCCGATCCACAATCTGATGGAAGACGCCG CCACCGCCGAAATCTCCCGCAGCCAGATCTGGCAGTGGATACATCACGGCGCGCAAATCATCGCCGCAGACGGCGCCGCC CGCACCTTCACCAAAGCCTGGTTCAACGACATTCTGGCCGATGAACTCGGCAAGGTGCGCGCTGCCCTCGGCGAGAATGG TTTCAAGGCCGGCCGCTATGATGTGGCCGCCGAAATCTTCACCCACACCGCGACCTCAGAAGAGCTCGCCGACTTCCTGA CGCTGCCCGCCTATGAAGCGCTGCGCACCCTTGCATGA
Upstream 100 bases:
>100_bases GTAAACATAAAAACCCAATGGAAACAGAAAGGTACTCGCTCTCATGCCGGGTTGTAAATAAGGTTGTGTCAAGAATTAAG ACATCCAGGGAGAACCGGCC
Downstream 100 bases:
>100_bases TCCGTCAACACACTAATCAGAACCTTCTCCAGGGAGATACTCTCATGTCCAAACGCCCTACCTATGCCGAGCTGCGCGCC CAGGTCCAGAAACGTTACCC
Product: malate synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MSTTATLEHPSATRAKIEVKGKAAGVERVLTPQALAFIEALERRFGARRRELLSLRKERQARFDAGELPDFLPETKSIRN GHWEVDPVPSVLLDRSVEITGPVDRKMMINALNSGAKMFMADFEDASSPTFANMIDGQVNMQDFARGKLAYTDAGSGKSY ALNDKVAVMIVRPRGWHMEEAHIFVDGRPISASLFDFGLHFYHNGKMLFEAGIGPFYYLPKMESHLEARLWDEVFEYAQG EIGIPTGSIKATVLIETLPAAFEMDEILYELRRHIAGLNCGRWDYIFSYIKTLRNHADFVLPDRAQVGMDRAFLNAYSLL LIKTCHRRRAHAMGGMAAQIPVKNDEAANDAAFAKVRADKLREVKNGHDGTWVAHPALVPVALEVFNEHMALGNQVLSQR CFPPINQSALLKPHTGEITEAGVRTNVSVGIEYTAAWLNGRGAVPIHNLMEDAATAEISRSQIWQWIHHGAQIIAADGAA RTFTKAWFNDILADELGKVRAALGENGFKAGRYDVAAEIFTHTATSEELADFLTLPAYEALRTLA
Sequences:
>Translated_545_residues MSTTATLEHPSATRAKIEVKGKAAGVERVLTPQALAFIEALERRFGARRRELLSLRKERQARFDAGELPDFLPETKSIRN GHWEVDPVPSVLLDRSVEITGPVDRKMMINALNSGAKMFMADFEDASSPTFANMIDGQVNMQDFARGKLAYTDAGSGKSY ALNDKVAVMIVRPRGWHMEEAHIFVDGRPISASLFDFGLHFYHNGKMLFEAGIGPFYYLPKMESHLEARLWDEVFEYAQG EIGIPTGSIKATVLIETLPAAFEMDEILYELRRHIAGLNCGRWDYIFSYIKTLRNHADFVLPDRAQVGMDRAFLNAYSLL LIKTCHRRRAHAMGGMAAQIPVKNDEAANDAAFAKVRADKLREVKNGHDGTWVAHPALVPVALEVFNEHMALGNQVLSQR CFPPINQSALLKPHTGEITEAGVRTNVSVGIEYTAAWLNGRGAVPIHNLMEDAATAEISRSQIWQWIHHGAQIIAADGAA RTFTKAWFNDILADELGKVRAALGENGFKAGRYDVAAEIFTHTATSEELADFLTLPAYEALRTLA >Mature_544_residues STTATLEHPSATRAKIEVKGKAAGVERVLTPQALAFIEALERRFGARRRELLSLRKERQARFDAGELPDFLPETKSIRNG HWEVDPVPSVLLDRSVEITGPVDRKMMINALNSGAKMFMADFEDASSPTFANMIDGQVNMQDFARGKLAYTDAGSGKSYA LNDKVAVMIVRPRGWHMEEAHIFVDGRPISASLFDFGLHFYHNGKMLFEAGIGPFYYLPKMESHLEARLWDEVFEYAQGE IGIPTGSIKATVLIETLPAAFEMDEILYELRRHIAGLNCGRWDYIFSYIKTLRNHADFVLPDRAQVGMDRAFLNAYSLLL IKTCHRRRAHAMGGMAAQIPVKNDEAANDAAFAKVRADKLREVKNGHDGTWVAHPALVPVALEVFNEHMALGNQVLSQRC FPPINQSALLKPHTGEITEAGVRTNVSVGIEYTAAWLNGRGAVPIHNLMEDAATAEISRSQIWQWIHHGAQIIAADGAAR TFTKAWFNDILADELGKVRAALGENGFKAGRYDVAAEIFTHTATSEELADFLTLPAYEALRTLA
Specific function: Glyoxylate bypass; second step. [C]
COG id: COG2225
COG function: function code C; Malate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malate synthase family [H]
Homologues:
Organism=Escherichia coli, GI1790444, Length=517, Percent_Identity=52.6112185686654, Blast_Score=541, Evalue=1e-155, Organism=Caenorhabditis elegans, GI17561814, Length=522, Percent_Identity=50.3831417624521, Blast_Score=522, Evalue=1e-148, Organism=Caenorhabditis elegans, GI71982926, Length=410, Percent_Identity=52.4390243902439, Blast_Score=444, Evalue=1e-125, Organism=Saccharomyces cerevisiae, GI6324212, Length=534, Percent_Identity=50, Blast_Score=514, Evalue=1e-146, Organism=Saccharomyces cerevisiae, GI6322222, Length=529, Percent_Identity=50.0945179584121, Blast_Score=512, Evalue=1e-146,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011076 - InterPro: IPR006252 - InterPro: IPR001465 - InterPro: IPR019830 [H]
Pfam domain/function: PF01274 Malate_synthase [H]
EC number: =2.3.3.9 [H]
Molecular weight: Translated: 60490; Mature: 60358
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTTATLEHPSATRAKIEVKGKAAGVERVLTPQALAFIEALERRFGARRRELLSLRKERQ CCCCCCCCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH ARFDAGELPDFLPETKSIRNGHWEVDPVPSVLLDRSVEITGPVDRKMMINALNSGAKMFM HCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEE ADFEDASSPTFANMIDGQVNMQDFARGKLAYTDAGSGKSYALNDKVAVMIVRPRGWHMEE EECCCCCCCCHHHHCCCCCCHHHHHCCCEEEEECCCCCCEEECCCEEEEEECCCCCCCCC AHIFVDGRPISASLFDFGLHFYHNGKMLFEAGIGPFYYLPKMESHLEARLWDEVFEYAQG CEEEECCCCCCHHHHHHCCEEEECCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHCCC EIGIPTGSIKATVLIETLPAAFEMDEILYELRRHIAGLNCGRWDYIFSYIKTLRNHADFV CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE LPDRAQVGMDRAFLNAYSLLLIKTCHRRRAHAMGGMAAQIPVKNDEAANDAAFAKVRADK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHH LREVKNGHDGTWVAHPALVPVALEVFNEHMALGNQVLSQRCFPPINQSALLKPHTGEITE HHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHH AGVRTNVSVGIEYTAAWLNGRGAVPIHNLMEDAATAEISRSQIWQWIHHGAQIIAADGAA CCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH RTFTKAWFNDILADELGKVRAALGENGFKAGRYDVAAEIFTHTATSEELADFLTLPAYEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHH LRTLA HHHCC >Mature Secondary Structure STTATLEHPSATRAKIEVKGKAAGVERVLTPQALAFIEALERRFGARRRELLSLRKERQ CCCCCCCCCCCCCEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH ARFDAGELPDFLPETKSIRNGHWEVDPVPSVLLDRSVEITGPVDRKMMINALNSGAKMFM HCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHCCCEEECCCCCHHHHHHHHCCCCEEEE ADFEDASSPTFANMIDGQVNMQDFARGKLAYTDAGSGKSYALNDKVAVMIVRPRGWHMEE EECCCCCCCCHHHHCCCCCCHHHHHCCCEEEEECCCCCCEEECCCEEEEEECCCCCCCCC AHIFVDGRPISASLFDFGLHFYHNGKMLFEAGIGPFYYLPKMESHLEARLWDEVFEYAQG CEEEECCCCCCHHHHHHCCEEEECCEEEEEECCCCEEECCCHHHHHHHHHHHHHHHHCCC EIGIPTGSIKATVLIETLPAAFEMDEILYELRRHIAGLNCGRWDYIFSYIKTLRNHADFV CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEE LPDRAQVGMDRAFLNAYSLLLIKTCHRRRAHAMGGMAAQIPVKNDEAANDAAFAKVRADK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHH LREVKNGHDGTWVAHPALVPVALEVFNEHMALGNQVLSQRCFPPINQSALLKPHTGEITE HHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHH AGVRTNVSVGIEYTAAWLNGRGAVPIHNLMEDAATAEISRSQIWQWIHHGAQIIAADGAA CCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCH RTFTKAWFNDILADELGKVRAALGENGFKAGRYDVAAEIFTHTATSEELADFLTLPAYEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCHHHH LRTLA HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA