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The map label for this gene is rnk [H]

Identifier: 114800117

GI number: 114800117

Start: 2451504

End: 2451890

Strand: Reverse

Name: rnk [H]

Synonym: HNE_2351

Alternate gene names: 114800117

Gene position: 2451890-2451504 (Counterclockwise)

Preceding gene: 114797163

Following gene: 114800429

Centisome position: 66.18

GC content: 59.43

Gene sequence:

>387_bases
ATGTCCCAAATCACCCGTCCGCCCATTTATGTCACCGATGCTGAACTGGAGCGCCTTTCAGACCTTGCCCATGCTGTGCA
GGGCAGGGAGCCGGCTGCTGACATGCTGATCGAGGAGCTTTCGCGCGCCAGGGTGACGGCCGTTGAGGACGTGCCCGTGG
ATGTCGTGCGGATGCATGACAGGGTCAATTTTGTATATGACGGGGCGCGCTATGAAGACTTCACGCTTGTCTACCCCTAC
GAGGCAAATATCGCAGACAAGCGGATCTCCATTCTGACCCAGGTGGGCGCCATGCTGATTGGGCTGCAGGTAGGCGATGC
GATGCAGTGGGCCGGCCGGGATGGCAGGGGGCACTCCATGGAAGTGCTGGAAGTATCGCGCAATTGA

Upstream 100 bases:

>100_bases
AATTCAGGCGCCGTCAGGGGGACAAAACACAATCCACAATCATTCTTTTTCTGGTCCGCGCCACAAAAGGCTGCGGCGCA
TTCGTTTATCTGGAGCCATC

Downstream 100 bases:

>100_bases
GGGCGTTTCGGATCAAAGGCGGGCCGTATCCGGGGTTCGGGAGGCAGCGGAGCGGCAGGGAAAATAATATTACTTTTCCG
AAATCCGGATTGCTGCGGCC

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MSQITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRVNFVYDGARYEDFTLVYPY
EANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSMEVLEVSRN

Sequences:

>Translated_128_residues
MSQITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRVNFVYDGARYEDFTLVYPY
EANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSMEVLEVSRN
>Mature_127_residues
SQITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHDRVNFVYDGARYEDFTLVYPYE
ANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSMEVLEVSRN

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=125, Percent_Identity=37.6, Blast_Score=74, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14360; Mature: 14229

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHD
CCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHCC
RVNFVYDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSM
CCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCE
EVLEVSRN
EEEEECCC
>Mature Secondary Structure 
SQITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEELSRARVTAVEDVPVDVVRMHD
CCCCCCCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCHHHHHHCC
RVNFVYDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAGRDGRGHSM
CCEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCE
EVLEVSRN
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]