| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is fyuA [H]
Identifier: 114799050
GI number: 114799050
Start: 1124461
End: 1126641
Strand: Direct
Name: fyuA [H]
Synonym: HNE_1117
Alternate gene names: 114799050
Gene position: 1124461-1126641 (Clockwise)
Preceding gene: 114798393
Following gene: 114798154
Centisome position: 30.35
GC content: 59.61
Gene sequence:
>2181_bases ATGGGTTTGAGAACTTCACTTTCAGTGAGCGCGAGCCTTGCGGTTCTGCTCTCGGGTGCCAGCCTGCTTCCGGCAGTGGC ACAGGAAACAGAGGCCGACGAGGCCGATCGCCGCCTTGGCGCCATTACCGTGACCGCTCAGCGCGTCGAAGAAAACCTGC AGGATGTGCCCGTCGCCGTGACGGCGCTTGATACCGCAATGCTTGAAGACAAGCAGGTCGGCGATCTGCTCGACCTCCAG TCTGTTGTCCCCAACATCAACATGGCGACCAACACAGGTACGGCCAACGCAGCCCGCATCTTCCTGCGCGGCGTCGGCGA AGATGAAAGCCGCGGCGCGGTTGATCAGGCTGTCGGCATCTATGTGGACGGCGTTTACGTCGGCCGCTCGGTCGGCTCGC TTTTCGACGTCGTTGACCTGGCCTCGATCGAGGTTCTCCGTGGTCCGCAAGGCACGCTTTACGGCCGCAACACCATCGGC GGCGCCGTGAAGCTGACCTCCATCAAACCGCAATTCGAAAATTCAGGCGAAGTGCGCACCACGGTCGGCAACAATGGCCG CTTTGATGCCCGCGGGACAGCCAACGTCCAGCTTGGCGAGAACTCGGCTTTCCGTCTGACCGGCCTGTTGCGTGAGCGCG ACGGCTTCCATGACGTGATCCCGAACGGCGCAAATGCCAGCGAACGCCGCGACGATGTTGGCAGCACCCACATCATGGCG CTTCGTGGCAGCTTCTACACGGAATTTTCGCCGGAATGGTCGCTGCTCGTGGCCGCTGACCAGACCATCGACCGTTCGGA CCCGATCCCGGACTCGGTTGCGCCCGGTGCTGATGCAGATGACGACATCTTCACCATCGAGCCCATTCCCGGCACCGTTT GCACACCTGGTTCGACCGCCATCGGTTGTTTCACCGGCTATGATCAGCGCTCCAAATCTGCCGGTGTTTCGGCAACCATC AAGGGCGATATTGCCGGGCTAGATTTCACCTCGATCAGCGCCTACCGGTCGCTGGAAGACAATCTGGTAACGCGCATCGG CTCGCCATATAGTCAGCAGACAGACCAGTCCCAGATCAGCCAGGAGTTCACGCTCGGCAGCTCTGGCGATGTCCTCGACT GGCTGATCGGCGGCTTCTATTTCAACGAAGATCTGTCGATGGATTCGGTCTTCATCTTCCCGCATGAAATCGACGCTGAA ACAGAATCCTACGCTCTGTTCGGTCAGGGCACGTATTCGGTCACCGATGCGCTCAGCCTGACGGGCGGTGTGCGTTTCAC GACGGAGACGAAGGATTTTTCAGGCGCCAACGGTGTCCTGCCCTTCAGCCGGACCGACAGCGCAGACTATGACAATGTCA GCTACACCATTGGGGCAGACTACCGCTTCAACGACGCCATGCTGGGCTATGCGAAATACTCAACGGGCTTCAAGTCCGGT GGCTGGTCGCCAGACGCGTTCAGCGCCACGGCCGTCTTCCTCCGCGTCGATGAAGAAACGCTCGACTCTTTCGAGGTGGG CCTGAAGACGGACCTGTTCGATGACAAGGTGCGCATCAACACGGCCGCCTTCTTCAACAAGTATGAAGGTCTCCAGATCG GCGCGACGGTTCCGGGCCTTGGCTTCACCCGTTTCAATGTCGACGAGACAGAGATCATGGGTCTTGAAGTGGAAGGTATC TGGCAGGTTACGGACAATTTCCAGCTGAACGGCAACCTCGGTCTGCTCGATGCGGAATACACCGATATGACCGGCGATCA GGCACGTGGTCTCACCAACAATGGCGCGGGTTGCCCGGCCGGTACGGTGGCTGCGGACAATGCACAGGTCATCGCCTGCG CGCTGGGCCTCAGCCTCAAGAATGCGCCGGAATATAAAGCAACGCTTGGCGCGCTCTACACGATGTCGTTCTATGATGGC GAGCTCATCTTCTCGGGCGATGTCAGCTTCGAGGACGACTCCTGGAGCCTGGTTGCCAACAATCCGGCACATGCTCTGAG CGAAATCCCGACCCTGATGAACGCCCGCGTGAAATATGAATCCGCGCAAGGCTGGTCACTCGCTGTCTGGGGCAAGAACC TGTCGGACGAGGAATACTACCGCGCCACCACAGCCGGTTCCTTCTCGACCTATGCCTCCGAGCCGATCACCTACGGGATC GATCTCGGCTGGAAGTTCTAA
Upstream 100 bases:
>100_bases AATTGACTTTGACCGGACATATTGTAATCAAGGCGACGCAAAAGATATATCATTTGCGGAGACGGGGGTTGGCTCTGTCT ACAGCTCGGGAGGACCCCCA
Downstream 100 bases:
>100_bases GCTTCACACAAACGCCCTCCCAGAACAGAAAAGCCCCGGCAGCGATGCCGGGGCTTTTTACTATGATATGTGCCAGAAGG CCGGATCAGGCGTCCGCACG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 726; Mature: 725
Protein sequence:
>726_residues MGLRTSLSVSASLAVLLSGASLLPAVAQETEADEADRRLGAITVTAQRVEENLQDVPVAVTALDTAMLEDKQVGDLLDLQ SVVPNINMATNTGTANAARIFLRGVGEDESRGAVDQAVGIYVDGVYVGRSVGSLFDVVDLASIEVLRGPQGTLYGRNTIG GAVKLTSIKPQFENSGEVRTTVGNNGRFDARGTANVQLGENSAFRLTGLLRERDGFHDVIPNGANASERRDDVGSTHIMA LRGSFYTEFSPEWSLLVAADQTIDRSDPIPDSVAPGADADDDIFTIEPIPGTVCTPGSTAIGCFTGYDQRSKSAGVSATI KGDIAGLDFTSISAYRSLEDNLVTRIGSPYSQQTDQSQISQEFTLGSSGDVLDWLIGGFYFNEDLSMDSVFIFPHEIDAE TESYALFGQGTYSVTDALSLTGGVRFTTETKDFSGANGVLPFSRTDSADYDNVSYTIGADYRFNDAMLGYAKYSTGFKSG GWSPDAFSATAVFLRVDEETLDSFEVGLKTDLFDDKVRINTAAFFNKYEGLQIGATVPGLGFTRFNVDETEIMGLEVEGI WQVTDNFQLNGNLGLLDAEYTDMTGDQARGLTNNGAGCPAGTVAADNAQVIACALGLSLKNAPEYKATLGALYTMSFYDG ELIFSGDVSFEDDSWSLVANNPAHALSEIPTLMNARVKYESAQGWSLAVWGKNLSDEEYYRATTAGSFSTYASEPITYGI DLGWKF
Sequences:
>Translated_726_residues MGLRTSLSVSASLAVLLSGASLLPAVAQETEADEADRRLGAITVTAQRVEENLQDVPVAVTALDTAMLEDKQVGDLLDLQ SVVPNINMATNTGTANAARIFLRGVGEDESRGAVDQAVGIYVDGVYVGRSVGSLFDVVDLASIEVLRGPQGTLYGRNTIG GAVKLTSIKPQFENSGEVRTTVGNNGRFDARGTANVQLGENSAFRLTGLLRERDGFHDVIPNGANASERRDDVGSTHIMA LRGSFYTEFSPEWSLLVAADQTIDRSDPIPDSVAPGADADDDIFTIEPIPGTVCTPGSTAIGCFTGYDQRSKSAGVSATI KGDIAGLDFTSISAYRSLEDNLVTRIGSPYSQQTDQSQISQEFTLGSSGDVLDWLIGGFYFNEDLSMDSVFIFPHEIDAE TESYALFGQGTYSVTDALSLTGGVRFTTETKDFSGANGVLPFSRTDSADYDNVSYTIGADYRFNDAMLGYAKYSTGFKSG GWSPDAFSATAVFLRVDEETLDSFEVGLKTDLFDDKVRINTAAFFNKYEGLQIGATVPGLGFTRFNVDETEIMGLEVEGI WQVTDNFQLNGNLGLLDAEYTDMTGDQARGLTNNGAGCPAGTVAADNAQVIACALGLSLKNAPEYKATLGALYTMSFYDG ELIFSGDVSFEDDSWSLVANNPAHALSEIPTLMNARVKYESAQGWSLAVWGKNLSDEEYYRATTAGSFSTYASEPITYGI DLGWKF >Mature_725_residues GLRTSLSVSASLAVLLSGASLLPAVAQETEADEADRRLGAITVTAQRVEENLQDVPVAVTALDTAMLEDKQVGDLLDLQS VVPNINMATNTGTANAARIFLRGVGEDESRGAVDQAVGIYVDGVYVGRSVGSLFDVVDLASIEVLRGPQGTLYGRNTIGG AVKLTSIKPQFENSGEVRTTVGNNGRFDARGTANVQLGENSAFRLTGLLRERDGFHDVIPNGANASERRDDVGSTHIMAL RGSFYTEFSPEWSLLVAADQTIDRSDPIPDSVAPGADADDDIFTIEPIPGTVCTPGSTAIGCFTGYDQRSKSAGVSATIK GDIAGLDFTSISAYRSLEDNLVTRIGSPYSQQTDQSQISQEFTLGSSGDVLDWLIGGFYFNEDLSMDSVFIFPHEIDAET ESYALFGQGTYSVTDALSLTGGVRFTTETKDFSGANGVLPFSRTDSADYDNVSYTIGADYRFNDAMLGYAKYSTGFKSGG WSPDAFSATAVFLRVDEETLDSFEVGLKTDLFDDKVRINTAAFFNKYEGLQIGATVPGLGFTRFNVDETEIMGLEVEGIW QVTDNFQLNGNLGLLDAEYTDMTGDQARGLTNNGAGCPAGTVAADNAQVIACALGLSLKNAPEYKATLGALYTMSFYDGE LIFSGDVSFEDDSWSLVANNPAHALSEIPTLMNARVKYESAQGWSLAVWGKNLSDEEYYRATTAGSFSTYASEPITYGID LGWKF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=246, Percent_Identity=25.2032520325203, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 77701; Mature: 77570
Theoretical pI: Translated: 4.01; Mature: 4.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLRTSLSVSASLAVLLSGASLLPAVAQETEADEADRRLGAITVTAQRVEENLQDVPVAV CCCCCCCCHHHEEEEECCCCHHHHHHHHHCCCCHHHHHEEEEEEEHHHHHHHHHHCCEEE TALDTAMLEDKQVGDLLDLQSVVPNINMATNTGTANAARIFLRGVGEDESRGAVDQAVGI EEHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCHHHEEEE YVDGVYVGRSVGSLFDVVDLASIEVLRGPQGTLYGRNTIGGAVKLTSIKPQFENSGEVRT EEEEEEECCHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCEEEEEEECCCCCCCCCEEE TVGNNGRFDARGTANVQLGENSAFRLTGLLRERDGFHDVIPNGANASERRDDVGSTHIMA EECCCCEECCCCCEEEEECCCCCEEEEEHHHHCCCCHHHCCCCCCCCHHHHCCCCEEEEE LRGSFYTEFSPEWSLLVAADQTIDRSDPIPDSVAPGADADDDIFTIEPIPGTVCTPGSTA EECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCE IGCFTGYDQRSKSAGVSATIKGDIAGLDFTSISAYRSLEDNLVTRIGSPYSQQTDQSQIS EEEEECCCCCCCCCCCEEEEECCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH QEFTLGSSGDVLDWLIGGFYFNEDLSMDSVFIFPHEIDAETESYALFGQGTYSVTDALSL HHCCCCCCCCHHHHHHCCEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCEEHHHHHHH TGGVRFTTETKDFSGANGVLPFSRTDSADYDNVSYTIGADYRFNDAMLGYAKYSTGFKSG CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCEEEEEECCCCCCCC GWSPDAFSATAVFLRVDEETLDSFEVGLKTDLFDDKVRINTAAFFNKYEGLQIGATVPGL CCCCCCCCEEEEEEEECHHHHHHHHCCCEECCCCCCEEEEEHHHHHCCCCEEEECCCCCC GFTRFNVDETEIMGLEVEGIWQVTDNFQLNGNLGLLDAEYTDMTGDQARGLTNNGAGCPA CEEEECCCCCEEEEEEEEEEEEEECCEEECCCEEEEECCCCCCCCCHHCCCCCCCCCCCC GTVAADNAQVIACALGLSLKNAPEYKATLGALYTMSFYDGELIFSGDVSFEDDSWSLVAN CCEECCCCEEEEEEECCCCCCCCCHHHHHEEEEEEEEECCEEEEECCCCCCCCCEEEEEC NPAHALSEIPTLMNARVKYESAQGWSLAVWGKNLSDEEYYRATTAGSFSTYASEPITYGI CHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCHHEEEECCCCCCHHCCCCEEEEE DLGWKF ECCCCC >Mature Secondary Structure GLRTSLSVSASLAVLLSGASLLPAVAQETEADEADRRLGAITVTAQRVEENLQDVPVAV CCCCCCCHHHEEEEECCCCHHHHHHHHHCCCCHHHHHEEEEEEEHHHHHHHHHHCCEEE TALDTAMLEDKQVGDLLDLQSVVPNINMATNTGTANAARIFLRGVGEDESRGAVDQAVGI EEHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCCCCCCHHHEEEE YVDGVYVGRSVGSLFDVVDLASIEVLRGPQGTLYGRNTIGGAVKLTSIKPQFENSGEVRT EEEEEEECCHHHHHHHHHHHHHEEEEECCCCCEEECCCCCCEEEEEEECCCCCCCCCEEE TVGNNGRFDARGTANVQLGENSAFRLTGLLRERDGFHDVIPNGANASERRDDVGSTHIMA EECCCCEECCCCCEEEEECCCCCEEEEEHHHHCCCCHHHCCCCCCCCHHHHCCCCEEEEE LRGSFYTEFSPEWSLLVAADQTIDRSDPIPDSVAPGADADDDIFTIEPIPGTVCTPGSTA EECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCE IGCFTGYDQRSKSAGVSATIKGDIAGLDFTSISAYRSLEDNLVTRIGSPYSQQTDQSQIS EEEEECCCCCCCCCCCEEEEECCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH QEFTLGSSGDVLDWLIGGFYFNEDLSMDSVFIFPHEIDAETESYALFGQGTYSVTDALSL HHCCCCCCCCHHHHHHCCEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCEEHHHHHHH TGGVRFTTETKDFSGANGVLPFSRTDSADYDNVSYTIGADYRFNDAMLGYAKYSTGFKSG CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEECCCEEEEEECCCCCCCC GWSPDAFSATAVFLRVDEETLDSFEVGLKTDLFDDKVRINTAAFFNKYEGLQIGATVPGL CCCCCCCCEEEEEEEECHHHHHHHHCCCEECCCCCCEEEEEHHHHHCCCCEEEECCCCCC GFTRFNVDETEIMGLEVEGIWQVTDNFQLNGNLGLLDAEYTDMTGDQARGLTNNGAGCPA CEEEECCCCCEEEEEEEEEEEEEECCEEECCCEEEEECCCCCCCCCHHCCCCCCCCCCCC GTVAADNAQVIACALGLSLKNAPEYKATLGALYTMSFYDGELIFSGDVSFEDDSWSLVAN CCEECCCCEEEEEEECCCCCCCCCHHHHHEEEEEEEEECCEEEEECCCCCCCCCEEEEEC NPAHALSEIPTLMNARVKYESAQGWSLAVWGKNLSDEEYYRATTAGSFSTYASEPITYGI CHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCHHEEEECCCCCCHHCCCCEEEEE DLGWKF ECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA