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The map label for this gene is rutD [H]

Identifier: 114799036

GI number: 114799036

Start: 3223829

End: 3224704

Strand: Direct

Name: rutD [H]

Synonym: HNE_3052

Alternate gene names: 114799036

Gene position: 3223829-3224704 (Clockwise)

Preceding gene: 114797059

Following gene: 114800311

Centisome position: 87.01

GC content: 61.99

Gene sequence:

>876_bases
ATGCTGCCGGATGGCACAGATATTCACTGGACCTCGCCGGATGGTCTCACGCTCTATGCCAAAGCCTATGGACCCGAAGA
CGCCAGGCTGACAGTCCTGTGCCTTCACGGTCTGACACGGAATCATCAGGATTTCGAGCCGATGATCGCCGCCCTGCCCC
GCCACCACCGCTACATCGCGGTCGATGTGCGCGGACGCGGCAAGTCTGCTTATGATCCGAAGCCGGACAATTATCAGCCG
CCAGTCTATGCCAGGGACATGTTTGCCCTGCTCGACACCCTGGGCATCGCGCGCGCCGCCTTGATCGGCACCTCTATGGG
AGGGCTCATCTCTCTGCTGATGGCCCGCTCAGCGCCCAAACGGGTCGCCGGCATTGTACTCAATGATGTTGGCCCGGTCG
TTGAGAAAGCGGGCCTCGCGCGTATCGGGTCCTATGCCGGCAAGGTCGCTCCGGTCACGGACTGGGAAAGCGCGGCCGCT
GCTGTGAAGACATTACAAGGCGCCGCATTTCCGGACATGCCCGAAGGCCGCTGGATGGACTTTGCCCGGCGCACCTACAA
GGAACTTCCTTCCGGCGAAGTCGTTCTGGCTTACGACCCCGGCATTGCCCGCTCCCTGGGCAAGGTGAAACCCGGACCGG
TTACCAATTTCATTCTATGGCGCCTGTTTGCCGCTTCCCGAAAAGCGCCGCTTCTGATCATCCGGGGCGAGACATCTGAT
ATTCTGTCGGCCGGAACCGCAGAAATGATGGTCCGCCGGCATCCCGATGCCAGGCTGGCCACGGTGCCGCGGGTGGGCCA
TGCCCCGATCCTCGACGAGCCCCAGGCCGTTTCCGCTATTTCAGATTTTCTCAGCCGCCTGGAGACCACGGCATGA

Upstream 100 bases:

>100_bases
CAAACCGGCCCAATTTGCTTGCCTTTCTGAAAGCTTTGCGTCTATTTTTCAACAACTGTTGAAAACGGGGCATGAGCCCC
CGTACTGGGGAGGGCTTCGC

Downstream 100 bases:

>100_bases
CAAGTCCCGCCTTGCCTGTGGCCGCGCCCAAGATTTCCGGCCGGGCCTGGATACTTGCCGTCCTGACCCTGACATACACC
TTCAATCATGTGGACCGGCA

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLPDGTDIHWTSPDGLTLYAKAYGPEDARLTVLCLHGLTRNHQDFEPMIAALPRHHRYIAVDVRGRGKSAYDPKPDNYQP
PVYARDMFALLDTLGIARAALIGTSMGGLISLLMARSAPKRVAGIVLNDVGPVVEKAGLARIGSYAGKVAPVTDWESAAA
AVKTLQGAAFPDMPEGRWMDFARRTYKELPSGEVVLAYDPGIARSLGKVKPGPVTNFILWRLFAASRKAPLLIIRGETSD
ILSAGTAEMMVRRHPDARLATVPRVGHAPILDEPQAVSAISDFLSRLETTA

Sequences:

>Translated_291_residues
MLPDGTDIHWTSPDGLTLYAKAYGPEDARLTVLCLHGLTRNHQDFEPMIAALPRHHRYIAVDVRGRGKSAYDPKPDNYQP
PVYARDMFALLDTLGIARAALIGTSMGGLISLLMARSAPKRVAGIVLNDVGPVVEKAGLARIGSYAGKVAPVTDWESAAA
AVKTLQGAAFPDMPEGRWMDFARRTYKELPSGEVVLAYDPGIARSLGKVKPGPVTNFILWRLFAASRKAPLLIIRGETSD
ILSAGTAEMMVRRHPDARLATVPRVGHAPILDEPQAVSAISDFLSRLETTA
>Mature_291_residues
MLPDGTDIHWTSPDGLTLYAKAYGPEDARLTVLCLHGLTRNHQDFEPMIAALPRHHRYIAVDVRGRGKSAYDPKPDNYQP
PVYARDMFALLDTLGIARAALIGTSMGGLISLLMARSAPKRVAGIVLNDVGPVVEKAGLARIGSYAGKVAPVTDWESAAA
AVKTLQGAAFPDMPEGRWMDFARRTYKELPSGEVVLAYDPGIARSLGKVKPGPVTNFILWRLFAASRKAPLLIIRGETSD
ILSAGTAEMMVRRHPDARLATVPRVGHAPILDEPQAVSAISDFLSRLETTA

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 31458; Mature: 31458

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDGTDIHWTSPDGLTLYAKAYGPEDARLTVLCLHGLTRNHQDFEPMIAALPRHHRYIA
CCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEE
VDVRGRGKSAYDPKPDNYQPPVYARDMFALLDTLGIARAALIGTSMGGLISLLMARSAPK
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH
RVAGIVLNDVGPVVEKAGLARIGSYAGKVAPVTDWESAAAAVKTLQGAAFPDMPEGRWMD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
FARRTYKELPSGEVVLAYDPGIARSLGKVKPGPVTNFILWRLFAASRKAPLLIIRGETSD
HHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHH
ILSAGTAEMMVRRHPDARLATVPRVGHAPILDEPQAVSAISDFLSRLETTA
HHHCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLPDGTDIHWTSPDGLTLYAKAYGPEDARLTVLCLHGLTRNHQDFEPMIAALPRHHRYIA
CCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEE
VDVRGRGKSAYDPKPDNYQPPVYARDMFALLDTLGIARAALIGTSMGGLISLLMARSAPK
EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCH
RVAGIVLNDVGPVVEKAGLARIGSYAGKVAPVTDWESAAAAVKTLQGAAFPDMPEGRWMD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
FARRTYKELPSGEVVLAYDPGIARSLGKVKPGPVTNFILWRLFAASRKAPLLIIRGETSD
HHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHH
ILSAGTAEMMVRRHPDARLATVPRVGHAPILDEPQAVSAISDFLSRLETTA
HHHCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA