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The map label for this gene is secD1 [H]

Identifier: 114798563

GI number: 114798563

Start: 1996208

End: 1997815

Strand: Reverse

Name: secD1 [H]

Synonym: HNE_1926

Alternate gene names: 114798563

Gene position: 1997815-1996208 (Counterclockwise)

Preceding gene: 114797763

Following gene: 114798600

Centisome position: 53.92

GC content: 60.88

Gene sequence:

>1608_bases
ATGCTTCAGTTCCCTGCGTGGAAAGTACTGCTTGTATTAGGGGTGCTCGTGTGGGGCGTCGTGATGGCGCTCCCGAATGC
CGTGAATATGTCGAATGCGCCGGGCTTCATGCCCAAACAGGCGGTTAACCTCGGCCTGGATTTGCGCGGCGGCGTGTACC
TCGAAATGGAAATCCCGCCTGCGGAAGTCATCAGCAGCCGTCTCAGCGTGTTTGCGCGGGATGTGCGCTCGGCCTTTGCC
CGCACCGCGGACCGCGAGCCGATCTATTTCCAGCCGGAACTGCGCGGCCGCACCATGCTGATCAAGCTCAGCCGGCCCGA
TGCTGATGGCAACTATCCGGTCGAGGAAGCCTTGCGGCGGCTGGACCGGATCAATGGCCCGATTGAGGGCGGCCTCGCCG
GTGGCAAGACCTTCGAGATTACGCGCGCAGGGCAGGATGGTATCCTCGTATCGGTCTCGTCGGCGTCTGAATCCGCCATG
CTGGAAGATGCGCTGTCCAAAACCATGACGATTGTTCGCCGGCGCGTGGACCCTGAAGGCGTCGCCGAGATTTCGCTGAC
CCCGTCGGGCAACAACCGGATCGTTCTTGAAGCGCCGGGCGAGCCTGATCCAGAACGGCTGAAGACCCTGCTGAGCCGCG
ATGGGCGCATGACGTTCAATCTGGTCGAATCCAGCCCGGCAGAGATCGCTTCGGCGCAGGCGGGCATCGTCAAGCCGGGG
TATCGCCTGCTGGAAGGGCCGGAGACAGGCCCGCTGCTGGTCCGGGAAATCCCGGAAGTCGTCGGCTCTGATATCGCAAC
GGCCAGCCAGGGGAATGACGAGGCCAATCGCCCGCAGATCAATTTCCGTCTCAACGCCAATGGTGCGCGCAAATTTTACG
AAACGACGCGCAACAATTCCGGCCAGCTGTTTGCCATCGTTCTGGATGACGTGATCATGTCCGCGCCGCGGATCAACGAG
CCCATTCCCGGCGGGAGCGTTCGGATTACCGGCACCTTCACGATGACCGAAGCGCAGGATCTGGCAGCGATCATTGCCGC
CGGTGAGATGCCCGCGAAGGTACAGTTTCTCGATCAGCGCGTTGTCTCGTCCACGCTGGGCGAGGACTCCATCGAATCCG
GATACCGCGCCGCGATCGTGGGGTTGGCGCTCGTGGCGTTCTTCATGATCCTTGCATATGGTCTGCAGGGCATTTTTGCC
GTCTTCTCACTGGTCGCCAACATCGTCCTCATCTTCGCCGCGCTCTCTCTGCTCGGGGCGACGCTGACCCTCCCCGGCAT
TGCCGGCATCATCCTGACCATCGGTATGGCGGTGGATGCGAACGTGCTCGTGTTCGAGCGGATACGTGAAGAACAGCAGA
ATGGCCGGTCGGTCTGGACGGCTGTGCAGGCGGGTTATGAGCGGGCGCTGATCACCATTCTTGACGCCAACATCACGACA
TTGTTTGCCGCTGTGATCCTTTATTCGCTTGGGTCTGGTCCGGTGAAAGGCTTTGCCGTGACGCTGGCACTGGGGATCAT
CACGTCAGTGTTCACCGCCTTTGTGTTCACCCGGATGCTGACGATCTTCTGGATGAAGACCTTCAAGACCAAACGCTTCG
CTATCTAG

Upstream 100 bases:

>100_bases
CGTCATCAAGTCGATGGTGATCGAAGTTCGCAACAAGGCTGAACCGGTTCCAGCGAACGACTGACCTTCTGGCCCTCGGC
CAAAGCTATAGGAAAGCGCA

Downstream 100 bases:

>100_bases
GCCGTTGAGGACAGACACATGCTGATCAAATACTGGCCAACTGAAACCAAAATTCCCTTCATGCGGTATCGCTATGTCGG
GGTGGTGCTGTCCGTGATCA

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MLQFPAWKVLLVLGVLVWGVVMALPNAVNMSNAPGFMPKQAVNLGLDLRGGVYLEMEIPPAEVISSRLSVFARDVRSAFA
RTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEALRRLDRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAM
LEDALSKTMTIVRRRVDPEGVAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIVKPG
YRLLEGPETGPLLVREIPEVVGSDIATASQGNDEANRPQINFRLNANGARKFYETTRNNSGQLFAIVLDDVIMSAPRINE
PIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQRVVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFA
VFSLVANIVLIFAALSLLGATLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDANITT
LFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI

Sequences:

>Translated_535_residues
MLQFPAWKVLLVLGVLVWGVVMALPNAVNMSNAPGFMPKQAVNLGLDLRGGVYLEMEIPPAEVISSRLSVFARDVRSAFA
RTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEALRRLDRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAM
LEDALSKTMTIVRRRVDPEGVAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIVKPG
YRLLEGPETGPLLVREIPEVVGSDIATASQGNDEANRPQINFRLNANGARKFYETTRNNSGQLFAIVLDDVIMSAPRINE
PIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQRVVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFA
VFSLVANIVLIFAALSLLGATLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDANITT
LFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI
>Mature_535_residues
MLQFPAWKVLLVLGVLVWGVVMALPNAVNMSNAPGFMPKQAVNLGLDLRGGVYLEMEIPPAEVISSRLSVFARDVRSAFA
RTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEALRRLDRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAM
LEDALSKTMTIVRRRVDPEGVAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIVKPG
YRLLEGPETGPLLVREIPEVVGSDIATASQGNDEANRPQINFRLNANGARKFYETTRNNSGQLFAIVLDDVIMSAPRINE
PIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQRVVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFA
VFSLVANIVLIFAALSLLGATLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDANITT
LFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=514, Percent_Identity=32.8793774319066, Blast_Score=249, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57638; Mature: 57638

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQFPAWKVLLVLGVLVWGVVMALPNAVNMSNAPGFMPKQAVNLGLDLRGGVYLEMEIPP
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCEEECCCEEEEEECCH
AEVISSRLSVFARDVRSAFARTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEALRR
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH
LDRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAMLEDALSKTMTIVRRRVDPEG
HHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
VAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIVKPG
CEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCC
YRLLEGPETGPLLVREIPEVVGSDIATASQGNDEANRPQINFRLNANGARKFYETTRNNS
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCC
GQLFAIVLDDVIMSAPRINEPIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQR
CCEEEEEEHHHHHCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHH
VVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFAVFSLVANIVLIFAALSLLGA
HHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDANITT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHEEEEEECCCHHH
LFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MLQFPAWKVLLVLGVLVWGVVMALPNAVNMSNAPGFMPKQAVNLGLDLRGGVYLEMEIPP
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCEEECCCEEEEEECCH
AEVISSRLSVFARDVRSAFARTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEALRR
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHH
LDRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAMLEDALSKTMTIVRRRVDPEG
HHHCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
VAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIVKPG
CEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHCCCCCCCCC
YRLLEGPETGPLLVREIPEVVGSDIATASQGNDEANRPQINFRLNANGARKFYETTRNNS
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCC
GQLFAIVLDDVIMSAPRINEPIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQR
CCEEEEEEHHHHHCCCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHH
VVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFAVFSLVANIVLIFAALSLLGA
HHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDANITT
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHEEEEEECCCHHH
LFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA